Detail information of GWHGAAZE000958


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010090780.11.32334E-58Peroxisome biogenesis protein 6 [Morus notabilis]
Swissprottr|Q8RY16|PEX6_ARATH3E-54Peroxisome biogenesis protein 6
trEMBLtr|W9R896|W9R896_9ROSA5E-59Peroxisome biogenesis protein 6 {ECO:0000313|EMBL:EXB40813.1}
TAIR10AT1G03000.13E-47peroxin 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2047472620475218-
GWHAAZE00000001mRNA2047472620475218-
GWHAAZE00000001exon2047472620474870-
GWHAAZE00000001exon2047492720475072-
GWHAAZE00000001exon2047518020475218-
GWHAAZE00000001CDS2047518020475218-
GWHAAZE00000001CDS2047492720475072-
GWHAAZE00000001CDS2047472620474870-
Transcript Sequence

Network for GWHGAAZE000958

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA1441.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13339PEX6, PXAAA1 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.204
SRR3591708Shoot apex0.041
SRR3591709Stem0.000
SRR3591710White floral bud0.734
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 4.051
SRR8316896Juvenile bud stage 2.652
SRR8316897Juvenile bud stage 1.426
SRR8316894Third green stage 1.056
SRR8316900Third green stage 0.744
SRR8316901Third green stage 1.333
SRR8316898Complete white stage 0.021
SRR8316899Complete white stage 1.893
SRR8316903Complete white stage 1.261
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.015
SRR8316905Silver flowering stage0.028
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.028
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.952
SRR6706287Light intensity 50%1.293
SRR6706288Light intensity 20%1.504
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.027
CNS0095593Slightly white alabastrum(diploid) 21.416
CNS0095594Slightly white alabastrum(diploid) 32.578
CNS0095595Whole white alabastrum(diploid) 23.025
CNS0095596Whole white alabastrum(diploid) 31.790
CNS0095597Whole white alabastrum(diploid) 41.648
CNS0095598Silvery flower (diploied) 11.023
CNS0095599Silvery flower (diploied) 21.534
CNS0095600Silvery flower (diploied) 30.114
CNS0095601Golden flower (diploid) 11.375
CNS0095602Golden flower (diploid) 20.400
CNS0095603Golden flower (diploid) 30.184
CNS0095604Slightly white alabastrum(tetraploid) 13.273
CNS0095605Slightly white alabastrum(tetraploid) 22.306
CNS0095606Slightly white alabastrum(tetraploid) 32.146
CNS0095607Whole white alabastrum(tetraploid) 11.841
CNS0095608Whole white alabastrum(tetraploid) 20.542
CNS0095609Whole white alabastrum(tetraploid) 30.238
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.264
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.101
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 17.557
CRR073298Stem 23.381
CRR073299Stem 31.915
CRR073300Leaf 11.033
CRR073301Leaf 21.978
CRR073302Leaf 30.060
CRR073303Juvenile bud 10.381
CRR073304Juvenile bud 20.064
CRR073305Juvenile bud 30.759
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.022
CRR073310Second white 20.000
CRR073311Second white 30.026
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.023
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.629
CRR073319Tawny withering 20.862
CRR073320Tawny withering 32.246