Gene detail

Detail information of GWHGAAZE000901

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN47831.1	9.8887E-148	RuvB-like 1 [Glycine soja]
Swissprot	tr\|Q9FMR9\|RIN1_ARATH	1E-144	RuvB-like protein 1
trEMBL	tr\|A0A061GVD3\|A0A061GVD3_THECC	6E-148	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 {ECO:0000313\|EMBL:EOY33373.1}
TAIR10	AT5G22330.1	6E-117	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19161167	19164654	+
GWHAAZE00000001	mRNA	19161167	19164654	+
GWHAAZE00000001	exon	19161167	19161217	+
GWHAAZE00000001	exon	19161338	19161403	+
GWHAAZE00000001	exon	19161956	19162111	+
GWHAAZE00000001	exon	19162557	19162586	+
GWHAAZE00000001	exon	19162803	19162937	+
GWHAAZE00000001	exon	19163733	19163798	+
GWHAAZE00000001	exon	19163881	19163987	+
GWHAAZE00000001	exon	19164213	19164312	+
GWHAAZE00000001	exon	19164637	19164654	+
GWHAAZE00000001	CDS	19161167	19161217	+
GWHAAZE00000001	CDS	19161338	19161403	+
GWHAAZE00000001	CDS	19161956	19162111	+
GWHAAZE00000001	CDS	19162557	19162586	+
GWHAAZE00000001	CDS	19162803	19162937	+
GWHAAZE00000001	CDS	19163733	19163798	+
GWHAAZE00000001	CDS	19163881	19163987	+
GWHAAZE00000001	CDS	19164213	19164312	+
GWHAAZE00000001	CDS	19164637	19164654	+

Transcript Sequence
>GWHTAAZE000903 ATGGAAAATTTTCGACGTGCTATTGGTTTACGGATTAAGGAAATCAAGGAGGTGACAGAACTCTCCCCGGAGGAAACCGAGAGCGTGACTGGTGGATATGGTAAAAGCATTAGCCATGTAGCTGTTGGAGACGTTATATACATTGAAGCAAACAGTGGTGCAGTTAAAAGGGTAGGTAGGAGTGATGTGTTTGCTACAGAATTCGATCTCGAGGCGGAAGAGTATGTTCCACTTCCTAAAGGGGAGGTTCATAAAAAGAAGGAGATTGTTCAGGGTGTCCGTGCTTCTTGGATCCCACTTAGCGATGTTACACTACATGATCTTGATGCAGCAAATGCACGGCCTCAAGGTGGACAAGATATACTGTCCCTTATGGGTAAGATGATGAAGCCCAGGAAAACAGAAATAACTGACAAGTTACGACAAGAAATTAATAAGGTGGTTAATCGTTATATTGATGAAGGCGTGACAGAGCTCATTCCAGGAGTCTTATTTATTGATGAGGTACATATGTTGGATATGGAGTGCTTTTCATATTTGAATCGTGCTTTAGAGAGCTCATTATCCCCGATAGTGATCTTTGCAACAAATAGAGGAATATGTAATGTAAGAGGAACCGATATGAATAGTCCTCATGGAATTCCAGTTGACTTGTTGGACCGACTGGTGATTATACGGACAGAAACGTACGGTCCAGCTGAGATGATACAGAACTACTTCAACCTCTGA

Network for GWHGAAZE000901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06068.14	TIP49	39	230	6.20E-86

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04499	RUVBL1, RVB1, INO80H	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0003678	molecular_function	DNA helicase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.289
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.543
	SRR3591710	White floral bud	0.033
	SRR3591711	White flower	0.147
	SRR3591712	Green floral bud	0.077
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.086
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.091
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.025
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.104
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.242
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.120
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.111
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.083
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.005
	CNS0095613	Golden flower (tetraploid) 1	0.066
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.014
CRA001975	CRR073297	Stem 1	0.054
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.004
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.072
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000