Gene detail

Detail information of GWHGAAZE000865

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089365.1	1.0687E-103	PREDICTED: NEDD8-specific protease 1 [Sesamum indicum]
Swissprot	tr\|Q9LSS7\|RUBP1_ARATH	4E-87	NEDD8-specific protease 1
trEMBL	tr\|A5B6B5\|A5B6B5_VITVI	1E-100	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN67573.1}
TAIR10	AT5G60190.1	7E-72	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18317484	18320499	+
GWHAAZE00000001	mRNA	18317484	18320499	+
GWHAAZE00000001	exon	18317484	18318175	+
GWHAAZE00000001	exon	18318899	18319140	+
GWHAAZE00000001	exon	18319260	18319365	+
GWHAAZE00000001	exon	18319851	18319950	+
GWHAAZE00000001	exon	18320401	18320499	+
GWHAAZE00000001	CDS	18317484	18318175	+
GWHAAZE00000001	CDS	18318899	18319140	+
GWHAAZE00000001	CDS	18319260	18319365	+
GWHAAZE00000001	CDS	18319851	18319950	+
GWHAAZE00000001	CDS	18320401	18320499	+

Transcript Sequence
>GWHTAAZE000867 ATGCTTACAGTTGACATATACAACATTGCAAAATCCTCTGCTGATGATAAGTTTCTAAGCTATAACGACGTTGTACTTAGACGATCCGATCTGACAATTCTAAGTGGCCCACATTTTTTCAATGACCGCATAATCGAGTTTTATTTCAGTTACCTCACTTCATGCCACCCTTCTGAGTTCATCTTACTGGTCCCACCTTCAATCTCCTTTTGGGTAACAAACTGCCCGGATCTCGAAAGCATCAAAGATTTCCTACAACCCCTAAATTTCCCCCGCAAGAAACTCGTTATCTTCCCCATCAATGACAACAATGACGTGGAAAAAGCCGAGGGGGGGAGCCATTGGAGCTTACTTGCATTTTACAGAGGAAAGAATGTGTTTGTGCATCATGATAGCTTTGGAGGATCTAATAAGCTCTATGCCAAACGGCTATACGAAGCTCTTGTTCCATATATGGGAATCTCAAATGGGGCCTACGTTGAGTGTTCTAATACTCCCCAGCAAATGAATGGTTATGATTGCGGGTTATATGTTTTAGCCGTTGTAAGAGCCATATGTTGTTGGTATGAAAGAGAAGGGCCGAAGGATGAAGAGGATTTGTGGTTTACTTATGTGAAGGAGCAGGTTTCTCCATTGGTGGTTTTTGGTATGCGTAATGAGATTCTAGGGCTGATACGAAGCTTAGGCGCAATAGACAAGAGGATGGATCCATCATCGAGTGTTTCAAAGGAAGAGGATACCTTGGGGCTAGAATACAACAACAACAACGTAAAGAAGGCAAGGCTACTTTCTACTCTTGCTACTCTCCTCGACGATCCAATACTCGCCGACGTGCCAAAGAAACCAACACTATCCGATGTGGATACGCTCATTAGCCTGGAACTTGGGAGTGCTATGCGCATCAACTTCCTTAAAATGGACCGCACCTCCTTCGATGTTGCGGTGATGAATTCTGCAACAGTTAAGGATTTGAAACTGGCTATCAAGAAGAAGGTTAACGAAATGGAGCAGTCCAAGATGGGTCATCGCCATATTTCTTGGAAACACGTCTGGGGAAACTTTTGCCTTGTACACCACAATGAGAAACTACTAGATGACAATGCTGCCCTTCAGGATTTTGGCATTCGTACTAATTCCCAGGTGCACTTTGTTCCATACGTGGCGGCAAGGGCAACTCAAAGGCACTCGCGGAGGAAGAAACATCGGTTCTTCCACGGCCTTAATAGAAGAAGCGCCTAA

Network for GWHGAAZE000865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	88	186	8.90E-12
PF18036.2	Ubiquitin_4	299	386	9.40E-30

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.626
	SRR3591706	second leaf	11.270
	SRR3591707	mature leaf	10.498
	SRR3591708	Shoot apex	14.889
	SRR3591709	Stem	17.046
	SRR3591710	White floral bud	14.490
	SRR3591711	White flower	15.733
	SRR3591712	Green floral bud	17.995
	SRR3591713	Yellow flower	11.880
SRP173429	SRR8316895	Juvenile bud stage	14.836
	SRR8316896	Juvenile bud stage	21.652
	SRR8316897	Juvenile bud stage	12.755
	SRR8316894	Third green stage	7.278
	SRR8316900	Third green stage	20.851
	SRR8316901	Third green stage	20.281
	SRR8316898	Complete white stage	6.384
	SRR8316899	Complete white stage	24.030
	SRR8316903	Complete white stage	14.104
	SRR8316902	Silver flowering stage	8.944
	SRR8316904	Silver flowering stage	10.688
	SRR8316905	Silver flowering stage	3.598
	SRR8316906	Gold flowering stage	12.947
	SRR8316907	Gold flowering stage	15.337
	SRR8316908	Gold flowering stage	12.160
SRP132670	SRR6706286	Control	19.066
	SRR6706287	Light intensity 50%	20.239
	SRR6706288	Light intensity 20%	23.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.767
	CNS0095593	Slightly white alabastrum(diploid) 2	20.301
	CNS0095594	Slightly white alabastrum(diploid) 3	16.293
	CNS0095595	Whole white alabastrum(diploid) 2	15.952
	CNS0095596	Whole white alabastrum(diploid) 3	16.150
	CNS0095597	Whole white alabastrum(diploid) 4	16.498
	CNS0095598	Silvery flower (diploied) 1	15.042
	CNS0095599	Silvery flower (diploied) 2	15.032
	CNS0095600	Silvery flower (diploied) 3	11.992
	CNS0095601	Golden flower (diploid) 1	14.634
	CNS0095602	Golden flower (diploid) 2	11.948
	CNS0095603	Golden flower (diploid) 3	12.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.510
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.538
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.663
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.335
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.333
	CNS0095610	Silvery flower (tetraploid) 1	17.406
	CNS0095611	Silvery flower (tetraploid) 2	16.769
	CNS0095612	Silvery flower (tetraploid) 3	12.011
	CNS0095613	Golden flower (tetraploid) 1	8.574
	CNS0095614	Golden flower (tetraploid) 2	12.696
	CNS0095615	Golden flower (tetraploid) 3	5.573
CRA001975	CRR073297	Stem 1	19.567
	CRR073298	Stem 2	18.251
	CRR073299	Stem 3	14.869
	CRR073300	Leaf 1	23.401
	CRR073301	Leaf 2	26.218
	CRR073302	Leaf 3	18.053
	CRR073303	Juvenile bud 1	15.346
	CRR073304	Juvenile bud 2	12.817
	CRR073305	Juvenile bud 3	13.121
	CRR073306	Third green 1	5.184
	CRR073307	Third green 2	5.181
	CRR073308	Third green 3	5.243
	CRR073309	Second white 1	4.020
	CRR073310	Second white 2	5.589
	CRR073311	Second white 3	4.776
	CRR073312	Silver flowering 1	2.642
	CRR073313	Silver flowering 2	3.849
	CRR073314	Silver flowering 3	1.938
	CRR073315	Gold flowering 1	19.425
	CRR073316	Gold flowering 2	16.720
	CRR073317	Gold flowering 3	8.026
	CRR073318	Tawny withering 1	18.212
	CRR073319	Tawny withering 2	20.290
	CRR073320	Tawny withering 3	14.812