Gene detail

Detail information of GWHGAAZE000722

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002520511.1	5.5383E-175	tropinone reductase, putative [Ricinus communis]
Swissprot	tr\|Q9ASX2\|TRNH1_ARATH	8E-113	Tropinone reductase homolog At1g07440
trEMBL	tr\|B9S3E2\|B9S3E2_RICCO	2E-175	Tropinone reductase, putative {ECO:0000313\|EMBL:EEF41924.1}
TAIR10	AT2G29260.1	3E-113	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14641269	14646101	-
GWHAAZE00000001	mRNA	14641269	14646101	-
GWHAAZE00000001	exon	14641269	14641497	-
GWHAAZE00000001	exon	14641579	14641639	-
GWHAAZE00000001	exon	14642513	14642690	-
GWHAAZE00000001	exon	14643084	14643190	-
GWHAAZE00000001	exon	14643536	14643752	-
GWHAAZE00000001	exon	14644701	14644908	-
GWHAAZE00000001	exon	14645756	14646101	-
GWHAAZE00000001	five_prime_UTR	14646031	14646101	-
GWHAAZE00000001	CDS	14645756	14646030	-
GWHAAZE00000001	CDS	14644701	14644908	-
GWHAAZE00000001	CDS	14643536	14643752	-
GWHAAZE00000001	CDS	14643084	14643190	-
GWHAAZE00000001	CDS	14642513	14642690	-
GWHAAZE00000001	CDS	14641579	14641639	-
GWHAAZE00000001	CDS	14641269	14641497	-

Transcript Sequence
>GWHTAAZE000724 ATTTTTTATTCAAAAATACCTTTGGTGAGACAAGTGTGCCAACGCTAACCGGACACCTCGTCTGGTAAGACATGAACCATCGTCTCATTTTGACGAGGAAACCAAAACTCATATCTAGCCGACCGGCGGCGATGTCTCAGCCTGTCGTCCCACCTGCAACCTCGCACTCTCTGTCGGCGTCTCTCAACTTCAACCCTTGTATTTCACAACTCAAAACCCTAAAAATTCGTTCCATCAACACTTCATTTAAGTCCACAACAAATGCCATTGCAAATTTGAGCAGAGCTAGTAGATGGTCTCTTAATGGAATGACGGCTCTAGTCACCGGCGGTACCAGAGGAATCGGGCACGCAATTGTGGAGGAATTGGTGAGATTTGGGGCGAAAGTACATACATGTGCTCGTAATGAAGTGGAGTTGAATAGATGCTTGGGGGTTTGGGAGGATGAGGGTTTTGGAGTCACTGGTTCGGTTTGCAATGTGACTTCTACGATTGATCGAGAGAAGCTTATGGACTCTGTCTCATCTGTATTTGATGGAAAGCTTAACATTCTTGTTAATAATGTGGGAACAAACATTCGAAAACCTATGGTGGAGTTCACAGCTGAAGACTTTTCCACCCTAATGGCAACCAATTTCAAATCTGCTTTCCATATGTGTCAACTTGCATACCCTCTGTTGAAAGCATCAGGAGCAGGAAGTGTCGTATTCACTTCCTCGGTATCTGGTTTCGTCTCACTGAAGTCTATGTCTGTCCATGGAGCAACTAAAGGAGCAATCAATCAACTTACAAAGAACTTGGCATGCGAGTGGGCGAAGGACAATATCAGAAGCAATGCTGTCGCCCCTTGGTATATTAAGACCTCTATGGTGGAGCAAGTGCTCAGTAACAAGGAATATTTGGAAGAGGTGTATTCGCGCACTCCACTTGGGCGTCTTGGGGATCCAACTGAGGTCTCGTCCCTAGTTGCTTTCCTTTGCTTACCGGCATCATCTTACATAACTGGCCAAATAATTTGTGTTGATGGTGGCATGTCAATAAATGGCTTCTACCCAAAGCCAGTAGCTGGTCTCTTAAAGGGACGACCGCACTTTACTGGTGGAACCAAGGGAATTGGGCACGCTATTGTGGAGGAATTGGCTGGACTAGGGGCAGCAACACATAAATGTTCTTGGAGTGAAGCTGAACTGAATTCTTGCTCACGGGATTGGGAGCAGAAAGGTTTGTGCGTCACTGGTTCGGTCTACGATATATTGTCTCAACCCCAAAGAGAGTCATTAATGAATACCTTCTACACTGCATTTGATGGGAAATTGGACATACTTGTAAGTGCATTTCCACATTGA

Network for GWHGAAZE000722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	88	322	2.00E-59
PF00106.26	adh_short	342	420	5.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08081	TR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.490
	SRR3591706	second leaf	7.507
	SRR3591707	mature leaf	6.218
	SRR3591708	Shoot apex	10.688
	SRR3591709	Stem	2.733
	SRR3591710	White floral bud	3.731
	SRR3591711	White flower	4.373
	SRR3591712	Green floral bud	5.475
	SRR3591713	Yellow flower	1.685
SRP173429	SRR8316895	Juvenile bud stage	6.399
	SRR8316896	Juvenile bud stage	7.006
	SRR8316897	Juvenile bud stage	3.524
	SRR8316894	Third green stage	2.024
	SRR8316900	Third green stage	6.014
	SRR8316901	Third green stage	4.562
	SRR8316898	Complete white stage	1.836
	SRR8316899	Complete white stage	5.412
	SRR8316903	Complete white stage	2.657
	SRR8316902	Silver flowering stage	1.697
	SRR8316904	Silver flowering stage	3.806
	SRR8316905	Silver flowering stage	1.105
	SRR8316906	Gold flowering stage	3.480
	SRR8316907	Gold flowering stage	4.721
	SRR8316908	Gold flowering stage	6.157
SRP132670	SRR6706286	Control	8.432
	SRR6706287	Light intensity 50%	9.267
	SRR6706288	Light intensity 20%	9.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.986
	CNS0095593	Slightly white alabastrum(diploid) 2	5.099
	CNS0095594	Slightly white alabastrum(diploid) 3	5.928
	CNS0095595	Whole white alabastrum(diploid) 2	4.200
	CNS0095596	Whole white alabastrum(diploid) 3	3.844
	CNS0095597	Whole white alabastrum(diploid) 4	3.367
	CNS0095598	Silvery flower (diploied) 1	6.775
	CNS0095599	Silvery flower (diploied) 2	6.695
	CNS0095600	Silvery flower (diploied) 3	4.610
	CNS0095601	Golden flower (diploid) 1	5.306
	CNS0095602	Golden flower (diploid) 2	5.227
	CNS0095603	Golden flower (diploid) 3	5.273
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.657
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.818
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.662
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.737
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.878
	CNS0095610	Silvery flower (tetraploid) 1	6.121
	CNS0095611	Silvery flower (tetraploid) 2	7.898
	CNS0095612	Silvery flower (tetraploid) 3	4.436
	CNS0095613	Golden flower (tetraploid) 1	4.521
	CNS0095614	Golden flower (tetraploid) 2	4.567
	CNS0095615	Golden flower (tetraploid) 3	2.303
CRA001975	CRR073297	Stem 1	7.285
	CRR073298	Stem 2	5.751
	CRR073299	Stem 3	9.441
	CRR073300	Leaf 1	4.038
	CRR073301	Leaf 2	5.587
	CRR073302	Leaf 3	6.391
	CRR073303	Juvenile bud 1	7.022
	CRR073304	Juvenile bud 2	4.466
	CRR073305	Juvenile bud 3	4.219
	CRR073306	Third green 1	3.063
	CRR073307	Third green 2	2.446
	CRR073308	Third green 3	2.831
	CRR073309	Second white 1	4.478
	CRR073310	Second white 2	4.210
	CRR073311	Second white 3	3.258
	CRR073312	Silver flowering 1	3.162
	CRR073313	Silver flowering 2	3.797
	CRR073314	Silver flowering 3	3.704
	CRR073315	Gold flowering 1	12.772
	CRR073316	Gold flowering 2	11.165
	CRR073317	Gold flowering 3	8.482
	CRR073318	Tawny withering 1	3.847
	CRR073319	Tawny withering 2	5.123
	CRR073320	Tawny withering 3	4.744