Detail information of GWHGAAZE000714


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009771906.10PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Nicotiana sylvestris]
Swissprottr|O04857|PP12_TOBAC0Serine/threonine-protein phosphatase PP1 isozyme 2
trEMBLtr|K4CA03|K4CA03_SOLLC0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT5G59160.33E-157type one serine/threonine protein phosphatase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1452201314524759+
GWHAAZE00000001mRNA1452201314524759+
GWHAAZE00000001exon1452201314522214+
GWHAAZE00000001exon1452302614523157+
GWHAAZE00000001exon1452395414524513+
GWHAAZE00000001exon1452458614524759+
GWHAAZE00000001CDS1452201314522214+
GWHAAZE00000001CDS1452302614523157+
GWHAAZE00000001CDS1452395414524513+
GWHAAZE00000001CDS1452458614524759+
Transcript Sequence

Network for GWHGAAZE000714

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16891.6STPPase_N14612.50E-21
PF00149.29Metallophos1122999.00E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06269PPP1C mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
Meiosis - yeastmap04113
Oocyte meiosismap04114
Cellular senescencemap04218
Focal adhesionmap04510
Regulation of actin cytoskeletonmap04810
Platelet activationmap04611
Insulin signaling pathwaymap04910
Oxytocin signaling pathwaymap04921
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Inflammatory mediator regulation of TRP channelsmap04750

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.761
SRR3591706second leaf31.432
SRR3591707mature leaf29.386
SRR3591708Shoot apex52.343
SRR3591709Stem49.129
SRR3591710White floral bud50.374
SRR3591711White flower52.252
SRR3591712Green floral bud44.878
SRR3591713Yellow flower50.686
SRP173429 SRR8316895Juvenile bud stage 26.688
SRR8316896Juvenile bud stage 32.871
SRR8316897Juvenile bud stage 11.916
SRR8316894Third green stage 14.172
SRR8316900Third green stage 43.309
SRR8316901Third green stage 40.500
SRR8316898Complete white stage 16.756
SRR8316899Complete white stage 50.501
SRR8316903Complete white stage 27.738
SRR8316902Silver flowering stage16.078
SRR8316904Silver flowering stage16.941
SRR8316905Silver flowering stage8.583
SRR8316906Gold flowering stage 30.008
SRR8316907Gold flowering stage 27.380
SRR8316908Gold flowering stage 31.007
SRP132670SRR6706286Control27.220
SRR6706287Light intensity 50%26.638
SRR6706288Light intensity 20%30.128
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.822
CNS0095593Slightly white alabastrum(diploid) 227.493
CNS0095594Slightly white alabastrum(diploid) 328.288
CNS0095595Whole white alabastrum(diploid) 231.174
CNS0095596Whole white alabastrum(diploid) 336.278
CNS0095597Whole white alabastrum(diploid) 438.830
CNS0095598Silvery flower (diploied) 125.639
CNS0095599Silvery flower (diploied) 225.356
CNS0095600Silvery flower (diploied) 329.669
CNS0095601Golden flower (diploid) 121.491
CNS0095602Golden flower (diploid) 235.160
CNS0095603Golden flower (diploid) 331.359
CNS0095604Slightly white alabastrum(tetraploid) 136.736
CNS0095605Slightly white alabastrum(tetraploid) 230.787
CNS0095606Slightly white alabastrum(tetraploid) 339.819
CNS0095607Whole white alabastrum(tetraploid) 144.686
CNS0095608Whole white alabastrum(tetraploid) 237.591
CNS0095609Whole white alabastrum(tetraploid) 334.314
CNS0095610Silvery flower (tetraploid) 131.166
CNS0095611Silvery flower (tetraploid) 231.865
CNS0095612Silvery flower (tetraploid) 323.494
CNS0095613Golden flower (tetraploid) 115.977
CNS0095614Golden flower (tetraploid) 226.709
CNS0095615Golden flower (tetraploid) 322.863
CRA001975CRR073297Stem 137.525
CRR073298Stem 235.649
CRR073299Stem 344.201
CRR073300Leaf 137.299
CRR073301Leaf 233.278
CRR073302Leaf 334.809
CRR073303Juvenile bud 143.272
CRR073304Juvenile bud 237.678
CRR073305Juvenile bud 342.990
CRR073306Third green 120.978
CRR073307Third green 224.760
CRR073308Third green 322.744
CRR073309Second white 123.675
CRR073310Second white 221.790
CRR073311Second white 320.745
CRR073312Silver flowering 131.784
CRR073313Silver flowering 227.626
CRR073314Silver flowering 328.225
CRR073315Gold flowering 140.762
CRR073316Gold flowering 245.399
CRR073317Gold flowering 347.526
CRR073318Tawny withering 153.051
CRR073319Tawny withering 246.169
CRR073320Tawny withering 357.257