Gene detail

Detail information of GWHGAAZE000570

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007017086.1	0	High-level expression of sugar-inducible gene 2, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q5CCK4\|VAL2_ARATH	0	B3 domain-containing transcription repressor VAL2
trEMBL	tr\|A0A061GYW3\|A0A061GYW3_THECC	0	High-level expression of sugar-inducible gene 2, putative isoform 1 {ECO:0000313\|EMBL:EOY34706.1}
TAIR10	AT4G32010.1	9E-149	HSI2-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	11447399	11454932	+
GWHAAZE00000001	mRNA	11447399	11454932	+
GWHAAZE00000001	exon	11447399	11447558	+
GWHAAZE00000001	exon	11447993	11448134	+
GWHAAZE00000001	exon	11448596	11448677	+
GWHAAZE00000001	exon	11448764	11448903	+
GWHAAZE00000001	exon	11449572	11450161	+
GWHAAZE00000001	exon	11450792	11450888	+
GWHAAZE00000001	exon	11450972	11451146	+
GWHAAZE00000001	exon	11451632	11451708	+
GWHAAZE00000001	exon	11451814	11451897	+
GWHAAZE00000001	exon	11452390	11452647	+
GWHAAZE00000001	exon	11453061	11453110	+
GWHAAZE00000001	exon	11453297	11453410	+
GWHAAZE00000001	exon	11453982	11454049	+
GWHAAZE00000001	exon	11454238	11454932	+
GWHAAZE00000001	five_prime_UTR	11447399	11447558	+
GWHAAZE00000001	five_prime_UTR	11447993	11448134	+
GWHAAZE00000001	five_prime_UTR	11448596	11448658	+
GWHAAZE00000001	CDS	11448659	11448677	+
GWHAAZE00000001	CDS	11448764	11448903	+
GWHAAZE00000001	CDS	11449572	11450161	+
GWHAAZE00000001	CDS	11450792	11450888	+
GWHAAZE00000001	CDS	11450972	11451146	+
GWHAAZE00000001	CDS	11451632	11451708	+
GWHAAZE00000001	CDS	11451814	11451897	+
GWHAAZE00000001	CDS	11452390	11452647	+
GWHAAZE00000001	CDS	11453061	11453110	+
GWHAAZE00000001	CDS	11453297	11453410	+
GWHAAZE00000001	CDS	11453982	11454049	+
GWHAAZE00000001	CDS	11454238	11454932	+

Transcript Sequence
>GWHTAAZE000572 ATTGTGTATTTATATATTTCACTTATCTCCGCCACGTCTATCAAGAGACAACCACCACCGTTACAGTCCTCACCGCCACCGACCTCCATTTTTTACCCTGAGTTGACTCAGATTTGCTCTGAGATTATTCGAGTATTTCCGTTTAATGGGTTCGAATGAGATTTGGTTTAGGATTCATTTGGGTTAATGGGGTCCAACAAGATTTGCATGAATGAGAATTGCGGGGCAACAAATTCTATTGAATGGAAGAGAGGTTGGGGATTGAAATCAGGTGGATTTGCTTCACTTTGTTACAGTTGCGGATCAGCCTACCAAAATTTAGTTTTTTGCGAAAAATTCCACCTTGAAGAATCTGGTTGGAGGGAATGCAAGTATTGCGGAAAGCGTCTCCATTGTGGATGTGTAGCTTCAAAATATTTGCACCACTACTTGGATTTTGGAGGCGTGGGATGCCTAATATGCGTAAAAGATTTGGAAACTCAGTCCATAAGACCAAATCAGGTAATTTGTTATCTGTTCTTTTGCATGTACCAAGTGATGATTTGCACAACGGATTCAGCACATTGTCAAAAATCAATAATCAACAAGCATCTCTTGTTGAAAATGGAATCAATGGTGATACTATTGATACAAGAAAACTTATGCAGTTGGGAAGAACTACCGAGGGAAATCAACCCAACCACTCCCCTCTATCTCAGAACGGTGACCCAAGTTCATTGATATTACAAATCAAACAAGAAGAAAATATGCTTACCCAACCATTTACTCTACCCTCTATATTTTCCAAACCGAATGGTAGCATACCAATAGGGATTAAAGATATTTACCAATCATTAGTTCAACCATCCTCTAGTTTTCCTGTACGACCCTTTCCCGGTGGGGTTGTTGAAGGCGAAGAAGAGAACAAAGCTCCTCTCTTTCAAGAAGGGCAAAGTAGTCATATTTCGCCCAAGCCCCCTAAATTGGGCCCCAGTGTTGGACCGGCGGAGAAAAAAGGGAAGGTTTCTCAGACACGAGTTTCAAGGCCTCCTGCCGATGGGCGAGGCCGCAATCAGTTACTTCCAAGATACTGGCCTAAGATTACCGAACAAGAACTGCAGCAATTATCTGGAGATTTGAATTCCACTATTGTGCCGTTGTTTGAAAAGGTTTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTGCCTAAAGCATGTGCGGAAGCATATTTTCCTCCTATTAATCAATCAGAAGGTCTGCCAATTCGGATTAAAGATATAAAAGGGAAAGAATGGACATTTCAATTCAGATTTTGGACCAATAATAACAGCCGCATGTATGTTTTAGAGGGTGTCACACCTTGCTTACAGCATATGCAGTTACAAGCTGGCGACACTGTGACATTTAGTCGAATAGATCCAGGAGGAAAATTTGTGATGGGCTTTAGAAAGGCAACAAGCTTGGTTCATGTGCAGGACCCCCAAACATCTGCTGCCCTTCCTAATGGTACTGTTTCTGGAGAAACATCATTTTCTGGTTTTAATGGAAACTTGCCTACAGATACTTTTGATTGGCGGAAAAATGGGGAGCATGGAGGAGTGAAAACGGAGGAGCACACTGAATCCCCACTCATCATGGAGAAGAAGAAGAAAAAGAGTCGACAGATAGGGTCGAAAAGCAAGAGGCTACACATGCACAGTGAAGATGCTATGGAGCTTAGAGTTACATGGCAAGAAGCACAGGATATGCTCCGTCCATCCCCTCGTGCCACCCCAACCATTGTCATGATTGAGGACCATGAAATTGAGGAATACGATGAACCGCCAGTTTTCGGAAAGAGGACTATATTCGCAGAGAAAGAAACTGGGGAACAGGAACAATGGACTCAGTGTGATAGTTGCTCCAAATGGCGACGGTTGGCTGCTGATATTCTTCTCCCTCCGCATTGGACATGCTCTGACAATATTTCTGATCCAAATAGAAGTTCATGTTCTGATCCTGATGAGATGCATCCAAACAATCTTCAAAGTTGTTTTGGTGCTAACAGAGATTTTAAGAAGAGAAGAATGAAAGAAGACAATGTTGACCCGGAACAAGAGGCATCAGGCCTAGATGCTTTGGCTACCGCTGCTGTTTTAGAAGACTTGGGGGACTCTTCGGTGGAACCCACCACAAGGCACCCCAGGCACCGGTCCGGCTGCAGCTGCATAGTGTGCAGCCAGCCTCCGAGTGGTAAGGGCAAGCACCGGCCTGCGTGTGTATGCAATGTGTGCTCGACTGTTAGGCGCCGCTTTAAGACCCTTATGATGCGCAAGCGGAAAAGACAGTCTGAGCGCATATTGGAACGGCACGACATAGGAGACGCTGTGCTGGCTCTAGACGCGCTTGTGCCGTCAGCCGTGTCTGGAGACACATTGAGGCTGCCTTCAGAAGGCCCAGGCGGGGTCAAAACAGAGGCGGGTGAAATGGGGAGTGGGGTTTTGGACTTGAACTGCTATCCTAAACGTGAAGACGAGGTGATGGTGATGGTGGTGGAAGGAACAGTGGGAGATGGGGCGGGGCCTGTTGTTCCCGAAGCCGTTGTTCAGTTGGAGATGAGTTTTGGGCAGAATGGGAATCCAAGTTTTGGCTCTTCTTTGCCTTCGAAAGCCGAGGGTGAGATTGAGACCGAACAGGGTGCGGCAGAGGAACGCGGCATCAAGTCTTTAGATGCCAATAGGGAGAATGAGGGTAAAGAAGGGTGA

Network for GWHGAAZE000570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	259	358	1.20E-16
PF07496.16	zf-CW	501	543	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.088
	SRR3591706	second leaf	11.944
	SRR3591707	mature leaf	11.959
	SRR3591708	Shoot apex	15.487
	SRR3591709	Stem	18.302
	SRR3591710	White floral bud	10.857
	SRR3591711	White flower	14.604
	SRR3591712	Green floral bud	13.107
	SRR3591713	Yellow flower	11.647
SRP173429	SRR8316895	Juvenile bud stage	8.026
	SRR8316896	Juvenile bud stage	9.540
	SRR8316897	Juvenile bud stage	5.348
	SRR8316894	Third green stage	4.219
	SRR8316900	Third green stage	11.820
	SRR8316901	Third green stage	9.780
	SRR8316898	Complete white stage	3.582
	SRR8316899	Complete white stage	14.091
	SRR8316903	Complete white stage	6.040
	SRR8316902	Silver flowering stage	3.673
	SRR8316904	Silver flowering stage	4.703
	SRR8316905	Silver flowering stage	2.437
	SRR8316906	Gold flowering stage	9.455
	SRR8316907	Gold flowering stage	7.800
	SRR8316908	Gold flowering stage	9.034
SRP132670	SRR6706286	Control	14.078
	SRR6706287	Light intensity 50%	13.972
	SRR6706288	Light intensity 20%	15.076
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.760
	CNS0095593	Slightly white alabastrum(diploid) 2	7.988
	CNS0095594	Slightly white alabastrum(diploid) 3	7.099
	CNS0095595	Whole white alabastrum(diploid) 2	6.223
	CNS0095596	Whole white alabastrum(diploid) 3	5.048
	CNS0095597	Whole white alabastrum(diploid) 4	5.787
	CNS0095598	Silvery flower (diploied) 1	12.556
	CNS0095599	Silvery flower (diploied) 2	10.335
	CNS0095600	Silvery flower (diploied) 3	11.442
	CNS0095601	Golden flower (diploid) 1	8.890
	CNS0095602	Golden flower (diploid) 2	13.208
	CNS0095603	Golden flower (diploid) 3	12.961
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.727
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.503
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.367
	CNS0095610	Silvery flower (tetraploid) 1	12.759
	CNS0095611	Silvery flower (tetraploid) 2	10.970
	CNS0095612	Silvery flower (tetraploid) 3	9.948
	CNS0095613	Golden flower (tetraploid) 1	6.443
	CNS0095614	Golden flower (tetraploid) 2	11.097
	CNS0095615	Golden flower (tetraploid) 3	6.882
CRA001975	CRR073297	Stem 1	16.603
	CRR073298	Stem 2	15.889
	CRR073299	Stem 3	14.868
	CRR073300	Leaf 1	13.768
	CRR073301	Leaf 2	12.996
	CRR073302	Leaf 3	11.899
	CRR073303	Juvenile bud 1	11.410
	CRR073304	Juvenile bud 2	8.388
	CRR073305	Juvenile bud 3	14.194
	CRR073306	Third green 1	3.176
	CRR073307	Third green 2	2.962
	CRR073308	Third green 3	3.406
	CRR073309	Second white 1	3.744
	CRR073310	Second white 2	3.250
	CRR073311	Second white 3	3.566
	CRR073312	Silver flowering 1	4.005
	CRR073313	Silver flowering 2	4.669
	CRR073314	Silver flowering 3	4.133
	CRR073315	Gold flowering 1	7.732
	CRR073316	Gold flowering 2	12.819
	CRR073317	Gold flowering 3	9.261
	CRR073318	Tawny withering 1	14.679
	CRR073319	Tawny withering 2	11.891
	CRR073320	Tawny withering 3	11.557