Detail information of GWHGAAZE000452


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268996.10PREDICTED: probable methionine--tRNA ligase isoform X1 [Vitis vinifera]
Swissprottr|Q9ZTS1|SYM_ORYSJ0Probable methionine--tRNA ligase
trEMBLtr|D7SRQ8|D7SRQ8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI18340.3}
TAIR10AT4G13780.10methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene87890048793346-
GWHAAZE00000001mRNA87890048793346-
GWHAAZE00000001exon87890048789329-
GWHAAZE00000001exon87894408789583-
GWHAAZE00000001exon87897628789890-
GWHAAZE00000001exon87899908790055-
GWHAAZE00000001exon87901628790280-
GWHAAZE00000001exon87905198790633-
GWHAAZE00000001exon87907448790850-
GWHAAZE00000001exon87911208791210-
GWHAAZE00000001exon87912998791442-
GWHAAZE00000001exon87915578791787-
GWHAAZE00000001exon87923038792458-
GWHAAZE00000001exon87925688792721-
GWHAAZE00000001exon87929218793001-
GWHAAZE00000001exon87932048793346-
GWHAAZE00000001CDS87932048793346-
GWHAAZE00000001CDS87929218793001-
GWHAAZE00000001CDS87925688792721-
GWHAAZE00000001CDS87923038792458-
GWHAAZE00000001CDS87915578791787-
GWHAAZE00000001CDS87912998791442-
GWHAAZE00000001CDS87911208791210-
GWHAAZE00000001CDS87907448790850-
GWHAAZE00000001CDS87905198790633-
GWHAAZE00000001CDS87901628790280-
GWHAAZE00000001CDS87899908790055-
GWHAAZE00000001CDS87897628789890-
GWHAAZE00000001CDS87894408789583-
GWHAAZE00000001CDS87892678789329-
GWHAAZE00000001three_prime_UTR87890048789266-
Transcript Sequence

Network for GWHGAAZE000452

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09334.12tRNA-synt_1g2531.50E-15
PF09334.12tRNA-synt_1g754001.10E-119
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01874MARS, metG Metabolic pathways map01100
Selenocompound metabolismmap00450
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0006431biological_processmethionyl-tRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0000166molecular_functionnucleotide binding
GO:0004825molecular_functionmethionine-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.599
SRR3591706second leaf3.277
SRR3591707mature leaf4.837
SRR3591708Shoot apex4.136
SRR3591709Stem18.300
SRR3591710White floral bud19.359
SRR3591711White flower8.672
SRR3591712Green floral bud20.825
SRR3591713Yellow flower2.344
SRP173429 SRR8316895Juvenile bud stage 8.411
SRR8316896Juvenile bud stage 17.273
SRR8316897Juvenile bud stage 7.779
SRR8316894Third green stage 6.066
SRR8316900Third green stage 21.166
SRR8316901Third green stage 17.592
SRR8316898Complete white stage 2.994
SRR8316899Complete white stage 27.300
SRR8316903Complete white stage 4.428
SRR8316902Silver flowering stage3.087
SRR8316904Silver flowering stage3.716
SRR8316905Silver flowering stage0.805
SRR8316906Gold flowering stage 1.754
SRR8316907Gold flowering stage 2.097
SRR8316908Gold flowering stage 4.233
SRP132670SRR6706286Control6.507
SRR6706287Light intensity 50%7.582
SRR6706288Light intensity 20%7.082
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.090
CNS0095593Slightly white alabastrum(diploid) 218.253
CNS0095594Slightly white alabastrum(diploid) 316.395
CNS0095595Whole white alabastrum(diploid) 214.968
CNS0095596Whole white alabastrum(diploid) 313.862
CNS0095597Whole white alabastrum(diploid) 412.080
CNS0095598Silvery flower (diploied) 17.792
CNS0095599Silvery flower (diploied) 23.437
CNS0095600Silvery flower (diploied) 33.247
CNS0095601Golden flower (diploid) 11.810
CNS0095602Golden flower (diploid) 21.974
CNS0095603Golden flower (diploid) 31.734
CNS0095604Slightly white alabastrum(tetraploid) 118.287
CNS0095605Slightly white alabastrum(tetraploid) 218.242
CNS0095606Slightly white alabastrum(tetraploid) 310.420
CNS0095607Whole white alabastrum(tetraploid) 118.519
CNS0095608Whole white alabastrum(tetraploid) 214.476
CNS0095609Whole white alabastrum(tetraploid) 313.164
CNS0095610Silvery flower (tetraploid) 16.179
CNS0095611Silvery flower (tetraploid) 24.035
CNS0095612Silvery flower (tetraploid) 32.914
CNS0095613Golden flower (tetraploid) 13.229
CNS0095614Golden flower (tetraploid) 24.565
CNS0095615Golden flower (tetraploid) 32.388
CRA001975CRR073297Stem 13.850
CRR073298Stem 23.970
CRR073299Stem 34.192
CRR073300Leaf 18.587
CRR073301Leaf 27.183
CRR073302Leaf 34.897
CRR073303Juvenile bud 17.538
CRR073304Juvenile bud 24.193
CRR073305Juvenile bud 312.471
CRR073306Third green 10.809
CRR073307Third green 21.437
CRR073308Third green 31.551
CRR073309Second white 10.300
CRR073310Second white 20.546
CRR073311Second white 30.759
CRR073312Silver flowering 10.372
CRR073313Silver flowering 20.709
CRR073314Silver flowering 30.348
CRR073315Gold flowering 13.840
CRR073316Gold flowering 25.216
CRR073317Gold flowering 34.774
CRR073318Tawny withering 116.302
CRR073319Tawny withering 226.731
CRR073320Tawny withering 320.607