Gene detail

Detail information of GWHGAAZE000443

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03866.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	5E-149	Transcriptional corepressor LEUNIG
trEMBL	tr\|A0A068U5U5\|A0A068U5U5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03866.1}
TAIR10	AT2G32700.6	0	LEUNIG_homolog

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	8528259	8537810	+
GWHAAZE00000001	mRNA	8528259	8537810	+
GWHAAZE00000001	exon	8528259	8528290	+
GWHAAZE00000001	exon	8529691	8529788	+
GWHAAZE00000001	exon	8529960	8530069	+
GWHAAZE00000001	exon	8530210	8530505	+
GWHAAZE00000001	exon	8530610	8530685	+
GWHAAZE00000001	exon	8530828	8530939	+
GWHAAZE00000001	exon	8531718	8531767	+
GWHAAZE00000001	exon	8531873	8532118	+
GWHAAZE00000001	exon	8532869	8533081	+
GWHAAZE00000001	exon	8534165	8534297	+
GWHAAZE00000001	exon	8534369	8534475	+
GWHAAZE00000001	exon	8534923	8535141	+
GWHAAZE00000001	exon	8535233	8535388	+
GWHAAZE00000001	exon	8535489	8535608	+
GWHAAZE00000001	exon	8535747	8535944	+
GWHAAZE00000001	exon	8537345	8537810	+
GWHAAZE00000001	CDS	8528259	8528290	+
GWHAAZE00000001	CDS	8529691	8529788	+
GWHAAZE00000001	CDS	8529960	8530069	+
GWHAAZE00000001	CDS	8530210	8530505	+
GWHAAZE00000001	CDS	8530610	8530685	+
GWHAAZE00000001	CDS	8530828	8530939	+
GWHAAZE00000001	CDS	8531718	8531767	+
GWHAAZE00000001	CDS	8531873	8532118	+
GWHAAZE00000001	CDS	8532869	8533081	+
GWHAAZE00000001	CDS	8534165	8534297	+
GWHAAZE00000001	CDS	8534369	8534475	+
GWHAAZE00000001	CDS	8534923	8535141	+
GWHAAZE00000001	CDS	8535233	8535388	+
GWHAAZE00000001	CDS	8535489	8535608	+
GWHAAZE00000001	CDS	8535747	8535944	+
GWHAAZE00000001	CDS	8537345	8537488	+
GWHAAZE00000001	three_prime_UTR	8537489	8537810	+

Transcript Sequence
>GWHTAAZE000445 ATGGCACAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTCTACATTCATGACTATTTGTTAAAAAGAAAGTTGCATGCTTCTGCTGAAGCTTTCATGACTGAAGGAAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTCTTTGAGTGGTGGTCTGTATTCTGGGACATCTTCATTGCGAGAACTAATGAGAAACATTCCGAGTCTGCAGCCTCATACATAGAGACACAACAAATAAAAGCAAGGGAACACCAACAACAGGTGCAAATGCAGCAGTTGCAACTCATGCAGCAGCGGAATGCTCAGTTGCAAAGAAGGGATCCTAATCATCCTCCGCTTGGTGGTCCAATAAATGCCTTGAACTCCGAAGGAATGATGGGACAGCCATCAGCCAGTGTATTGGCTATGAAAATGTATGAAGAAAGAATGAAACATCCACATGTAGTGGATTCGGAGACATCTCCAGTCATTATGGATGCCAATAGGATGGCCCTACTCAAATCTGCAACGAATCATCAAGGCCAGTTGGTACAAGGCACTGTTGGCAACATGTCCGCAGCTTTGCAGCAAATGCAAGGACGATTTCAACTGCCCACTGACATAAAATCGGAGGTTAATTTGGCTCCAACTCAGAAATCATTGCCTACGGATCCTTCATCAATATATGGACAAGCAATTTTGCAGTCAAAGTCTGGAATTGGCGGTGCAGGAGTAAATCAAGGTGTCACTGGTCTCCCGTTGAAGGGTTGGCCTCTAACTGGAATTGACCAGCTAAGGCCAGGTTTAGGTTTGCAAGTACAAAAGCCCAATCTACAGACCCAAAATCAGTTTCTCTTGGCATCACAACAACAGGCTTTAGCACCACCTCAGGCACAAGGCAACCTTGGAAGTCAACCGAACTATGGATTTTCGGGTTTGCAAAGAGGTAGTGTAAGTGCTAAAGACAGTCAACATACAAGGAATGATGGATCTATATGCTCCCCAGTTCAATCAAACTCACCAAAGAATAACAGAAAAAGGAAACAACACTCTTCTTCTGGAGCAGCCAATAGTACAGGTACAGCAAATACAGTGGGTCCTTCCCCAAATTCGCCACCGTCAACTCATACACCCGGTGATGGGATAACTACTGCTTGTAGTTTGCAGCATGTCAACAGTGTGCTGAAAAATACGATAATGTATGGTGCAGAAGGTCTTGCTTCTTCAACAAATCAGCTGGACGATATGGAGCATTTTGGAGATGTTGGGCCCCTGGATGATAATGTGCAATCATTTCTATCAAATGATGGAGGAGATTTATATGGCACAATAAAACAAACTCTTACTGAGCACAAAACAGAGTCTTCTAAGGGTTTTTCTTTTGGGGAGGTCGGCTGTATACGGACAAGAAATAAAGTTACCTGCTGTCATTTTTCTTCAGATGGGAAGTTGCTAGCAAGTGCTGGGCATGACAAGAAGGCTGTTCTGTGGAATATGGATACCCTTCGAACGGAAACTACCCCCGAGGAACACCAATACCTAATTACCGATGTTCGTTTTAGGCCGAATTCAACTCAGCTAGCAACAGCTTCCTTTGATAAGTCTGTTAGACTATGGGATGCAGCTAATGTAATTCTCTCTAGAGCTCGTGTAATAATAAATTTTAATTCTGATATGATTAACTTGGTCTCTCACATGCCAAGCTACTGTTTGCATGCATACACGGGGCACTCTTCACACGTTATATCCCTGGATTTCCATCCCAAGAAGAATGATTTATTCTGTTTTTGTGATAATAACAACGAAATTCGCTATTGGAATATTAGTCCATTCTCATGCACTCGAATTTCCAAGCAAGGAGGCAGTGCACAAGTGAGATTTCAACCAATAATTGGACATTTGTTGGCTGCAGCATCAGATAAAGTGGTGTCTATCTTTGATGTCGAAACTGACAGGCAAACCCACTCTTTCCAGGGGCACACCGGAGCGGTAAACTACCTGTGCTGGGATCCAAATGGTGATTATTTGGCATCTGTGAGTGAGGATTCTGTGAAAGTGTGGTCATTAGCGTCAGGGGACTGCATTCATGAGCTCAGCTCCAGTGGAAACCCGTTCCATTCTTGTGTTTTTCATCCAAGTTATTCAGCTCTCTTGGTGATCGGTGGAATGCGGTCACTGGAGCTGTGGAACATGGCTGAGAACAAGAGCATGACTGTTCCAGCACATGAAAATATAATTGCGTCGTTGGCACAGTCACCTATCACAGGAATGGTCGCCTCTGCTAGTCACGACAGTTCCGTTAAGTTATGGAAATGAAAAAATAAAAAGTAAAATGTTATTAATAATTTTATTATTGTAACTTTCTTGGAGCAGCGGGCACTGCTTCAACACACAAAAATGTGCTGAAAAAACTGCTTTGATCCACCAACTCTGGGTAAGATCACAGCAAGGAATTAGGGCGTCTAAGTTGAGATTTATCAATGTATTATTTTCTCGAGTGTTATGTTGTATTTATGAGTGATCGAGTATAGAGTTAAAAGATAGCGAGTGTTGAGAAGAATCCGAGAGCCTAAAAGTTGGGAGAAGAGAAAAGTAGCATTTTCTTTTGCAGCATCTGTCTATGATAAAGTGGCTGGTT

Network for GWHGAAZE000443

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08513.12	LisH	10	36	2.30E-06
PF00400.33	WD40	469	496	0.00058
PF00400.33	WD40	505	538	0.00014
PF00400.33	WD40	568	605	0.061
PF00400.33	WD40	651	686	7.10E-06
PF00400.33	WD40	735	769	0.054

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.701
	SRR3591706	second leaf	15.076
	SRR3591707	mature leaf	16.114
	SRR3591708	Shoot apex	16.246
	SRR3591709	Stem	18.424
	SRR3591710	White floral bud	26.301
	SRR3591711	White flower	24.122
	SRR3591712	Green floral bud	31.007
	SRR3591713	Yellow flower	17.846
SRP173429	SRR8316895	Juvenile bud stage	16.953
	SRR8316896	Juvenile bud stage	22.233
	SRR8316897	Juvenile bud stage	14.283
	SRR8316894	Third green stage	8.663
	SRR8316900	Third green stage	23.629
	SRR8316901	Third green stage	22.358
	SRR8316898	Complete white stage	6.993
	SRR8316899	Complete white stage	32.232
	SRR8316903	Complete white stage	12.998
	SRR8316902	Silver flowering stage	7.864
	SRR8316904	Silver flowering stage	11.013
	SRR8316905	Silver flowering stage	3.818
	SRR8316906	Gold flowering stage	13.231
	SRR8316907	Gold flowering stage	13.736
	SRR8316908	Gold flowering stage	14.308
SRP132670	SRR6706286	Control	23.243
	SRR6706287	Light intensity 50%	23.826
	SRR6706288	Light intensity 20%	26.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.063
	CNS0095593	Slightly white alabastrum(diploid) 2	21.702
	CNS0095594	Slightly white alabastrum(diploid) 3	19.373
	CNS0095595	Whole white alabastrum(diploid) 2	18.623
	CNS0095596	Whole white alabastrum(diploid) 3	13.242
	CNS0095597	Whole white alabastrum(diploid) 4	17.311
	CNS0095598	Silvery flower (diploied) 1	21.729
	CNS0095599	Silvery flower (diploied) 2	17.383
	CNS0095600	Silvery flower (diploied) 3	20.943
	CNS0095601	Golden flower (diploid) 1	17.857
	CNS0095602	Golden flower (diploid) 2	20.519
	CNS0095603	Golden flower (diploid) 3	20.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.281
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.701
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.482
	CNS0095610	Silvery flower (tetraploid) 1	19.888
	CNS0095611	Silvery flower (tetraploid) 2	25.564
	CNS0095612	Silvery flower (tetraploid) 3	19.142
	CNS0095613	Golden flower (tetraploid) 1	9.557
	CNS0095614	Golden flower (tetraploid) 2	18.464
	CNS0095615	Golden flower (tetraploid) 3	5.843
CRA001975	CRR073297	Stem 1	25.637
	CRR073298	Stem 2	21.050
	CRR073299	Stem 3	20.426
	CRR073300	Leaf 1	24.049
	CRR073301	Leaf 2	26.536
	CRR073302	Leaf 3	20.624
	CRR073303	Juvenile bud 1	20.146
	CRR073304	Juvenile bud 2	12.897
	CRR073305	Juvenile bud 3	25.061
	CRR073306	Third green 1	6.148
	CRR073307	Third green 2	4.327
	CRR073308	Third green 3	6.244
	CRR073309	Second white 1	5.475
	CRR073310	Second white 2	6.082
	CRR073311	Second white 3	5.963
	CRR073312	Silver flowering 1	3.095
	CRR073313	Silver flowering 2	3.366
	CRR073314	Silver flowering 3	3.609
	CRR073315	Gold flowering 1	22.380
	CRR073316	Gold flowering 2	38.765
	CRR073317	Gold flowering 3	21.394
	CRR073318	Tawny withering 1	26.601
	CRR073319	Tawny withering 2	24.105
	CRR073320	Tawny withering 3	23.418