Gene detail

Detail information of GWHGAAZE000379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652405.1	0	PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8W595\|SUVR4_ARATH	6E-128	Histone-lysine N-methyltransferase SUVR4
trEMBL	tr\|F6HZQ2\|F6HZQ2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60168.1}
TAIR10	AT3G04380.1	2E-110	SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7284573	7289113	-
GWHAAZE00000001	mRNA	7284573	7289113	-
GWHAAZE00000001	exon	7288931	7289113	-
GWHAAZE00000001	exon	7288813	7288848	-
GWHAAZE00000001	exon	7288113	7288710	-
GWHAAZE00000001	exon	7286581	7287929	-
GWHAAZE00000001	exon	7286124	7286371	-
GWHAAZE00000001	exon	7285739	7285805	-
GWHAAZE00000001	exon	7285596	7285646	-
GWHAAZE00000001	exon	7284743	7284839	-
GWHAAZE00000001	exon	7284573	7284598	-
GWHAAZE00000001	CDS	7288931	7289113	-
GWHAAZE00000001	CDS	7288813	7288848	-
GWHAAZE00000001	CDS	7288113	7288710	-
GWHAAZE00000001	CDS	7286581	7287929	-
GWHAAZE00000001	CDS	7286124	7286371	-
GWHAAZE00000001	CDS	7285739	7285805	-
GWHAAZE00000001	CDS	7285596	7285646	-
GWHAAZE00000001	CDS	7284743	7284839	-
GWHAAZE00000001	CDS	7284573	7284598	-

Transcript Sequence
>GWHTAAZE000381 ATGGCGCCCAATCCAAGAGTTTTGCAAGCCTTTCGGGCTATGAGGAATCTTGGAATTCCTGAAGAAAAAGTGAAACCTGTCTTGAAAAACCTTTTGAAACTGTATGAAAAGAAATGGGAACTTATTGAAGAAGAAAATTATAGAGCCCTTGCAGATGCTATATTTGAGGCTGAGGAAACTGAGGCTGAAGAAAAAAAGAAGAAACTTGAGAATACTGAACGTCAAAAAGTTTTCGAGGAAGAAGCTCAGGTATATGATGAGCCAGAAAGACCCTTAAAAAGGTTGCGGTTAAGACACCAAGAAGGCCAAAGTTCAACCTCATTTGGTAACTCTAGTCCTGGCCTGGGTGGAAGCCCTAGAGTGGAGGGAACTGAATTACCTGAAACTTTCCCCCAGCACGAGTCCCGAGGCACAGCAGCTCCTCAGCCCAGTTCTGAGAACACAAGGACTGAATCCCAGCCTGTTTCACCCCAGTTAATCACCAGAAACAGAGGAAAACAACCTGTTTCACCCAAAGCATTGGCATTACAGGAAAGATCTGATCAGCCAGATGTCACAATGAGAACTGAAGCTAATTCAGTTTCTTCTCCTAGGCGTCTTAGAGACAAAGGCAAGGAACCCCTCATACCTCAAAATCCTCAGAAGGAGAAGACTATAATTACTGAGAGATCATCACATGGAGTTCGCTTTAAAGAGCCAAAGGTTGAGCCTGGGTTTATCCGTGTACCTAAACAGAAAGTGCCTGTTACTCGTGCTTTGATCAAGCCTAAAGATGAGCCTATTACTGATGAAGCTCCCATCGCAGTGATCCATCCAGAGCCATTATCTAATGGGAATTCTTCTTTTGGAAACGGTTTGACGGGGGAACCACATGGACCTGATCCTCAACGGCTAGCGTCCCAATTGAAGGATGGAAAAGAAAAAAGTGATGGTATTCCAACTTCATCAGGTGAACCGAGAACCAATTGCGAGCTTGCAAAAATCCCGGATGAACCTGCTGCTAACCTAGAGATTGCTTCCTCGCCCTTGGGAGAGGTGAAAATTTCTCTGAGCTGTAACTCTGCTAGTGGAAAACATATGCCTAGTTTAGATGCAGTTGTAAAAGCAGTGGAGGATAAATGTCTCAAATCATACAAAGTCCTTGACCCGAATTTTTCCGTGAAGAAGCTCATGAAAGATATGTGTGAGTGCTTTTTGGAACTTCGAACTGACTCCAATAATGAATCACAAGAAACCATAAATGTTACACCAGCTACTGATTTATTACAAAATTGTGCAGCGGATGATGTGGGTGATAGTGGCATGGCAATTTGTCCTATGAGTGAACCAGTTGATATTCAGTGTGATGCTGGCATGGTGCTGGCTCAGATACCAAGACTTCCTCCACCTTCCGATGGTGTGAATGGATCTGTTGAACATGAAAAGAATAGTTGTACAAATGACAGAGAAACTGAAAATGACGGCAAAACTTTTAAGGAGATGGAGCATAATATCCAAAAAGATATTATTGGGAATGATGTTGAGACCAATCTGGAGATGGAGCATGATGTTGAAAAGGAAGTTAGTGGAATTGACATTGAAACTACTAATAAGGAGACGGATCAAAATGGGTTTGATCATACTAGTTCGGAAAGTTTGGTGGGTGTCAAACAGCATCAGTTAACTCCTGCTAATATAAAGTTGGTTCATGACATAGCCAAAGGACAAGAAAGAGTTACAATTTCATTAATAAATGAGATCAATGGCGATTCTCCTCAATCCTTTCAGTACATACCCCAAAATGTAGTTTTCCAGAGTGCTTGTTTGAATTTCTCTCTGGCTTGTATTAGGGATGATAATTGTTGCCCAACTTGTGATGGTGATTGTCTATTATCGCCCACGCCTTGTGCATGTGCACTTGAAAATGATGGCGATTTTGTGTATACATCAGAAGGCCTTGTAAAGGACGGGTTTTTAGATGAGTGTGTTTCTGTGACTCGTGACCCTCAAAAGCATTCTCTCTTTTACTGTAAGGAATGCCCACTAGAAATATTGAAAAATGAGATGTTAGAACCATGCAAAGGTCACGTAGGGAGGAAGTTCATCAAAGAGTGTTGGTGGAAATGTGGGTGCAGTAAACAGTGTGGCAATCGAGTGGTTCAGCGCGGTATAAATCGTAATTTGCAGGTTTTTATGACTACCGGAGGAAAAGGGTGGGGTCTCCGTAGCCTAGAGGACTTGCCAAAAGGTGCGTTTGTTTGTGAATATGTTGGAGAAGTATTAACCAACAAAGAACTCTATGATCGAATTTTGAAAAGTCCCAAGAATGAGGAACGGGCATATCCCGTGCTGCTTGATGCTGACTGGGGTTCAGGAGTTTTGAAGGAGGAAAAAGCTCTTTGTTTAGATGCTACAGATTTTGGGAATGTTGCAAGGTGCTTTGATTCCAACTTGGTTGAGATCCCGGTGGAAGTGGAGACTCCCGATCGCCATTACTATCATCTTGCCTTCTTCACTACAAGAAAGGTAGCGGCTTTGGAAGAGCTAACTTGGGACTATGGAACAGATTTTGATGATCATGATCACCCTGTCAAGGCGTTTCAGTGCTGTTGTGGCAGCAAGTTTTGCCGAAACATTAAACGTTCAAGTAGACCCAGATCTTCTGCCAGGATTTAA

Network for GWHGAAZE000379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10440.10	WIYLD	6	59	3.80E-23
PF05033.17	Pre-SET	565	711	5.90E-16
PF00856.29	SET	731	847	9.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.475
	SRR3591706	second leaf	21.431
	SRR3591707	mature leaf	18.775
	SRR3591708	Shoot apex	39.627
	SRR3591709	Stem	24.489
	SRR3591710	White floral bud	24.289
	SRR3591711	White flower	26.145
	SRR3591712	Green floral bud	25.261
	SRR3591713	Yellow flower	19.428
SRP173429	SRR8316895	Juvenile bud stage	17.127
	SRR8316896	Juvenile bud stage	22.303
	SRR8316897	Juvenile bud stage	11.963
	SRR8316894	Third green stage	8.695
	SRR8316900	Third green stage	20.011
	SRR8316901	Third green stage	17.188
	SRR8316898	Complete white stage	4.857
	SRR8316899	Complete white stage	22.220
	SRR8316903	Complete white stage	12.246
	SRR8316902	Silver flowering stage	5.395
	SRR8316904	Silver flowering stage	10.003
	SRR8316905	Silver flowering stage	4.085
	SRR8316906	Gold flowering stage	12.443
	SRR8316907	Gold flowering stage	11.162
	SRR8316908	Gold flowering stage	13.945
SRP132670	SRR6706286	Control	20.567
	SRR6706287	Light intensity 50%	20.931
	SRR6706288	Light intensity 20%	21.190
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.949
	CNS0095593	Slightly white alabastrum(diploid) 2	15.631
	CNS0095594	Slightly white alabastrum(diploid) 3	15.718
	CNS0095595	Whole white alabastrum(diploid) 2	13.271
	CNS0095596	Whole white alabastrum(diploid) 3	9.792
	CNS0095597	Whole white alabastrum(diploid) 4	11.836
	CNS0095598	Silvery flower (diploied) 1	22.470
	CNS0095599	Silvery flower (diploied) 2	19.838
	CNS0095600	Silvery flower (diploied) 3	19.396
	CNS0095601	Golden flower (diploid) 1	20.634
	CNS0095602	Golden flower (diploid) 2	23.996
	CNS0095603	Golden flower (diploid) 3	21.345
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.918
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.486
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.352
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.085
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.687
	CNS0095610	Silvery flower (tetraploid) 1	24.500
	CNS0095611	Silvery flower (tetraploid) 2	25.158
	CNS0095612	Silvery flower (tetraploid) 3	19.612
	CNS0095613	Golden flower (tetraploid) 1	12.047
	CNS0095614	Golden flower (tetraploid) 2	20.570
	CNS0095615	Golden flower (tetraploid) 3	11.367
CRA001975	CRR073297	Stem 1	25.342
	CRR073298	Stem 2	24.178
	CRR073299	Stem 3	21.762
	CRR073300	Leaf 1	20.483
	CRR073301	Leaf 2	19.546
	CRR073302	Leaf 3	11.390
	CRR073303	Juvenile bud 1	12.632
	CRR073304	Juvenile bud 2	9.166
	CRR073305	Juvenile bud 3	18.236
	CRR073306	Third green 1	2.787
	CRR073307	Third green 2	2.422
	CRR073308	Third green 3	3.363
	CRR073309	Second white 1	2.726
	CRR073310	Second white 2	3.927
	CRR073311	Second white 3	3.140
	CRR073312	Silver flowering 1	3.299
	CRR073313	Silver flowering 2	2.114
	CRR073314	Silver flowering 3	2.551
	CRR073315	Gold flowering 1	5.086
	CRR073316	Gold flowering 2	6.821
	CRR073317	Gold flowering 3	6.879
	CRR073318	Tawny withering 1	13.036
	CRR073319	Tawny withering 2	13.007
	CRR073320	Tawny withering 3	16.218