Gene detail

Detail information of GWHGAAZE000375

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588086.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
COG	YP_004775215.1	5E-59	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|M0ZWS9\|M0ZWS9_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400009696}
TAIR10	AT4G08850.1	0	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7255798	7260022	+
GWHAAZE00000001	mRNA	7255798	7260022	+
GWHAAZE00000001	exon	7255798	7256011	+
GWHAAZE00000001	exon	7256128	7259091	+
GWHAAZE00000001	exon	7259640	7260022	+
GWHAAZE00000001	CDS	7255798	7256011	+
GWHAAZE00000001	CDS	7256128	7259091	+
GWHAAZE00000001	CDS	7259640	7260022	+

Transcript Sequence
>GWHTAAZE000377 ATGAAAACTCTTGATCAGAAGCCTTGTTTAGTTATTTTCTATATACTCTTCCTCTCTTTACTTCCACTAAAGATAACACCATCAGCAAGAACAGAAGCAGAAGCACTTGTCCAATGGAAGAACACATTATCACCTTCAACCTCTCTCAATTCATGGTCTCTCACCAACCTCAGAAACCTATGCAACTGGACTGGTACTGTCTGTAACAGTGGTGGTCCAATCCCACCCACCATTGGCAATCTCTCAAAGATCACTTTCTTGGACTTGAGCAGTAATCTTCTTGATGACAACATACCGTTAGATATTGGGCAGTTAACGGAACTTGAATATCTTAGCTTTTTCGACAACTATCTCAACGGTAGTGTTCCATATCAAGTTACCAATCTTCAAAAGGTAAGGTACTTAGACCTTGGATCAAATTACTTAGAAACTCCAGATTGGTCAAGATTTTTAGCCATGCCATTGATGACCCACTTCAGCTTATATCTCAATTTACTTACCCTTGATTTCCCAGATTTCATTTCCAGTTGTAAGAACTTGACTTATCTTGATTTGTCATCAAACCAACTCACTGGCCCGATACCCGAATTGGTATTCACCAATATGGGCAATCTTGAATACCTCAATCTTACTGATAATTCATTTGGAGGTTTTTTCCCATCAAATATTTCCAAGCTTTCAAAACTAAAAGATCTTCGCCTCGGACTAAATAGATTCTCAGGCTTAATCCCAGAGAGTATAGGTTTGTTACCTGATCTTGAAGTCCTTGTATTCTTAAACAACTCATTAGGAGGAAATATTCCTTCTTCTCTAGGCCAACTTGGGAAGCTTAAGATGCTTGATCTTCGAATGAATCACTTCAACTCAACAATTCCTCCTGAGATTGGCTTGTGTACTAACCTCACTTTCTTGGCTCTTGCCCAGAATTCACTTTCCGGGGTCTTGCCTTCATCCTTTTCCAGGCTGACCAAGATTTCTGATTTGGGTTTATCTGATAATTCACTTTCTGGTGAGATATCGCCTTATTTCATCACCAATTGGACCGAATTGATATCACTGCAAATTCAAAACAACAGCTTCACTGGCAATATTCCAAGTGAGATTGGTCTATTGACCAAGCTCACTTATCTTTATTTGTACAATAACAAGCTCACTGGCCAAATCCCAAAAGGAATTGGCAACTTGAAACATTTGGTGGGTTTAGACCTTTCAATCAACCAGCTTTCAGGTCCAATTCCCCCAACTATTGGGGATCTCACAAACCTTTCTCTCTTACAGCTTTTTTCCAACAATCTTAGTGGAACAATTCGTCCCGAGATTGGGAATTTAACTTACTTGACCTTTCTTGATCTCAACACTAACTTGTTCAGTGGAGAGTTGCCCAATTCCATCTCCAACCTCAGTAATCTACAGACACTTTCTCTATTTACGAACAATTTCTCTGGCAGTATACCTAGGGACTTGGGGAAGAACAATCTCGTTTTGGCCAATGTTAGCTTTTCAAACAACAGCTTCTCTGGAGAATTGCCAAATGGATTATGCAGCGGATTTGCTTTCCAGGAATTCACGGCGAATGGCAACAATTTTAGTGGGCTTTTGCCAGATTGCTTGAGAAACTGCTCCAAATTAAGTAGGGTCCGGCTTGATGGAAACCAATTCACAGGAAACATTTCCGAGGCATTTGGAGTTCACCCCAATCTGATTTTCATTTCTCTTACTGGGAATCAATTTACGGGTGAACTCTCGCCTAAGTGGGGAGAATGTGAAATGCTCACAAATATACAGATGAGCAGAAATAGAATTTCGGGCCAAATTCCAGCTGAGCTAGCGAATTTGACAGAGCTGCACATTTTAAGCCTCGACTCAAACGAATTTATAGGTGAAATTCCTGCAGAACTTGGAAATCTGAGTGAGTTGCTCAATATGAATTTCAGCAATAATCAGCTCACAGGAGAGATCCCACAAAGTATTGGCAACTTAATGAGACTCTTATACCTTGATTTGTCAACAAACAAGTTGAGTGGAGGCATACCGACTGGGCTTGGCGATTGTGAAAATCTATTGACCCTGAACTTGAGCAACAATGCCTTGTTTGGGGACTTACCGACCGAGCTTGGCAACTTGAACGTGCTGCAGTACGGTTTGGACCTCAGTCGAAATTTGCTATCCGGGGCAATCCCCTTTAGCTTTGGAAGACTAATCTCATTAGAGAATATCAATCTTTCATATAATAATCTCTCGGGTAGGATTCCTTCATCACTATCTGGCATGATTAGTTTACGGGTCATTGATTTTTCCTATAATGAGTTGTCGGGTCCAATTCCTATTTTCCAGCAAGCACTGGAAAAGGTTTTCTTGGGAAATGCGGGTTTATGCGGAAATGCAGAAGGGTTGGCCTCATGTAACCCAACTCTCACAACAAGGAGGTCAAGAAAGTACAATAAAAAAGTTCTTATCGGCATCATTGTTCCAGTCGTAATCCTCTTTATTTTGGCAACAATCACTACTATTTGGTTCATCATTCGTAGAAGAAACAAGCAGCACGACGAAGAGACCAAAAGTGGCACGCATAACAGTGAAGACTCCGAGTCACTGATCTGGGAAAAGGAAGGAAAGTTCACATTCGGGGATTTAGTGAAAGCCACTAAAGACTTCAGTGATGAGTACTGCATTGGGAGAGGAGGATTCGGAAGTGTGTACAAAGCCGTATTACCAACAGGGCAGGTTTTAGCTGTGAAATGGCTTAACGTGTCGGACTCTAGCAACGTTCCAAAGGTGAACCGATGGAGCTTTGAGAATGAGATTCGAAGTTTGACAGAAGTTAGGCACAGGAACATAATAAAGCTCTATGGGTTCTGTTCTAAGGAGGGATGCATGTACCTAGTTTATGAGTACATGGAGAGGGGAAGTTTGGGAAAAGTGTTGTATAGTGAGGATGGGGCTGTGGAACTTGGCTGGGGCACAAGGGTGAAAATTGTGCAGGGACTAGCTCATGCACTTGCTTACTTGCACCATGACTGCTCCCCAGCTATTGTCCATAGGGACGTATCGATCAATAATATCTTGCTTGAGTCAGAGTTGGAGCCTCGACTCTCGGACTTTGGGACTGCAAGGTTATTGAGCTCGGATTCGTCTAACTGGACTTCAGTTGCAGGGTCTTACGGCTACATGGCACCAGAGCTTGCATTTACAATGAGGGTCACGGAGAAATGTGACGTGTACAGCTTTGGAGTGGTGGCACTGGAAGTTATGATGGGGAAGCACCCGGGAGAGCTAATCTCTTGCCTACAGTCATCCACAACCATGGAATCGTTGACCAGTGAACGAGTTCTGTTCTTGAAGGAGGTGCTAGACCAGCGGCTTCCTCCTCCCTTCGGCCATGTAGCAGAGGAAGTGGTGTTTGTAGTCACCATGGCATTGGCGTGTACTCGTTCAAAACCAGAGGCACGGCCTACTATGCGGTTTGTTGCCCAAGAACTTTCGGCAAAGACTCAGCCTTACCTGCCTGAACCATTGGGTTCAATAACGATGAACAAGCTTTCAGAAATAGAATGTAAATAA

Network for GWHGAAZE000375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	69	4.60E-05
PF13855.7	LRR_8	131	190	3.90E-07
PF00560.34	LRR_1	204	226	0.31
PF13855.7	LRR_8	715	770	2.20E-07
PF00069.26	Pkinase	888	1154	7.00E-44

Protein Sequence

>GWHPAAZE000376
MKTLDQKPCLVIFYILFLSLLPLKITPSARTEAEALVQWKNTLSPSTSLNSWSLTNLRNLCNWTGTVCNSGGPIPPTIGNLSKITFLDLSSNLLDDNIPLDIGQLTELEYLSFFDNYLNGSVPYQVTNLQKVRYLDLGSNYLETPDWSRFLAMPLMTHFSLYLNLLTLDFPDFISSCKNLTYLDLSSNQLTGPIPELVFTNMGNLEYLNLTDNSFGGFFPSNISKLSKLKDLRLGLNRFSGLIPESIGLLPDLEVLVFLNNSLGGNIPSSLGQLGKLKMLDLRMNHFNSTIPPEIGLCTNLTFLALAQNSLSGVLPSSFSRLTKISDLGLSDNSLSGEISPYFITNWTELISLQIQNNSFTGNIPSEIGLLTKLTYLYLYNNKLTGQIPKGIGNLKHLVGLDLSINQLSGPIPPTIGDLTNLSLLQLFSNNLSGTIRPEIGNLTYLTFLDLNTNLFSGELPNSISNLSNLQTLSLFTNNFSGSIPRDLGKNNLVLANVSFSNNSFSGELPNGLCSGFAFQEFTANGNNFSGLLPDCLRNCSKLSRVRLDGNQFTGNISEAFGVHPNLIFISLTGNQFTGELSPKWGECEMLTNIQMSRNRISGQIPAELANLTELHILSLDSNEFIGEIPAELGNLSELLNMNFSNNQLTGEIPQSIGNLMRLLYLDLSTNKLSGGIPTGLGDCENLLTLNLSNNALFGDLPTELGNLNVLQYGLDLSRNLLSGAIPFSFGRLISLENINLSYNNLSGRIPSSLSGMISLRVIDFSYNELSGPIPIFQQALEKVFLGNAGLCGNAEGLASCNPTLTTRRSRKYNKKVLIGIIVPVVILFILATITTIWFIIRRRNKQHDEETKSGTHNSEDSESLIWEKEGKFTFGDLVKATKDFSDEYCIGRGGFGSVYKAVLPTGQVLAVKWLNVSDSSNVPKVNRWSFENEIRSLTEVRHRNIIKLYGFCSKEGCMYLVYEYMERGSLGKVLYSEDGAVELGWGTRVKIVQGLAHALAYLHHDCSPAIVHRDVSINNILLESELEPRLSDFGTARLLSSDSSNWTSVAGSYGYMAPELAFTMRVTEKCDVYSFGVVALEVMMGKHPGELISCLQSSTTMESLTSERVLFLKEVLDQRLPPPFGHVAEEVVFVVTMALACTRSKPEARPTMRFVAQELSAKTQPYLPEPLGSITMNKLSEIECK

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.127
	SRR3591706	second leaf	4.527
	SRR3591707	mature leaf	7.966
	SRR3591708	Shoot apex	3.643
	SRR3591709	Stem	6.627
	SRR3591710	White floral bud	2.832
	SRR3591711	White flower	5.003
	SRR3591712	Green floral bud	2.898
	SRR3591713	Yellow flower	5.177
SRP173429	SRR8316895	Juvenile bud stage	3.024
	SRR8316896	Juvenile bud stage	3.310
	SRR8316897	Juvenile bud stage	2.049
	SRR8316894	Third green stage	1.315
	SRR8316900	Third green stage	2.796
	SRR8316901	Third green stage	2.832
	SRR8316898	Complete white stage	0.765
	SRR8316899	Complete white stage	7.288
	SRR8316903	Complete white stage	1.196
	SRR8316902	Silver flowering stage	1.005
	SRR8316904	Silver flowering stage	1.401
	SRR8316905	Silver flowering stage	0.677
	SRR8316906	Gold flowering stage	5.557
	SRR8316907	Gold flowering stage	4.048
	SRR8316908	Gold flowering stage	9.688
SRP132670	SRR6706286	Control	2.639
	SRR6706287	Light intensity 50%	2.707
	SRR6706288	Light intensity 20%	2.467
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.344
	CNS0095593	Slightly white alabastrum(diploid) 2	2.906
	CNS0095594	Slightly white alabastrum(diploid) 3	2.131
	CNS0095595	Whole white alabastrum(diploid) 2	1.364
	CNS0095596	Whole white alabastrum(diploid) 3	0.793
	CNS0095597	Whole white alabastrum(diploid) 4	1.572
	CNS0095598	Silvery flower (diploied) 1	3.184
	CNS0095599	Silvery flower (diploied) 2	3.227
	CNS0095600	Silvery flower (diploied) 3	3.631
	CNS0095601	Golden flower (diploid) 1	3.149
	CNS0095602	Golden flower (diploid) 2	4.331
	CNS0095603	Golden flower (diploid) 3	3.619
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.743
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.952
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.273
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.075
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.933
	CNS0095610	Silvery flower (tetraploid) 1	2.000
	CNS0095611	Silvery flower (tetraploid) 2	1.504
	CNS0095612	Silvery flower (tetraploid) 3	1.553
	CNS0095613	Golden flower (tetraploid) 1	2.511
	CNS0095614	Golden flower (tetraploid) 2	2.324
	CNS0095615	Golden flower (tetraploid) 3	0.821
CRA001975	CRR073297	Stem 1	2.260
	CRR073298	Stem 2	1.706
	CRR073299	Stem 3	1.784
	CRR073300	Leaf 1	3.337
	CRR073301	Leaf 2	3.742
	CRR073302	Leaf 3	3.573
	CRR073303	Juvenile bud 1	4.380
	CRR073304	Juvenile bud 2	1.644
	CRR073305	Juvenile bud 3	8.147
	CRR073306	Third green 1	0.717
	CRR073307	Third green 2	0.891
	CRR073308	Third green 3	1.506
	CRR073309	Second white 1	0.750
	CRR073310	Second white 2	0.753
	CRR073311	Second white 3	1.685
	CRR073312	Silver flowering 1	4.128
	CRR073313	Silver flowering 2	3.022
	CRR073314	Silver flowering 3	2.206
	CRR073315	Gold flowering 1	8.953
	CRR073316	Gold flowering 2	18.268
	CRR073317	Gold flowering 3	11.661
	CRR073318	Tawny withering 1	10.283
	CRR073319	Tawny withering 2	21.904
	CRR073320	Tawny withering 3	4.782