Gene detail

Detail information of GWHGAAZE000299

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281926.1	0	PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Vitis vinifera]
COG	YP_007108384.1	2E-13	WD40 repeat, subgroup
Swissprot	tr\|Q9FMU5\|UTP18_ARATH	0	U3 small nucleolar RNA-associated protein 18 homolog
trEMBL	tr\|F6GXL7\|F6GXL7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44703.1}
TAIR10	AT5G14050.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	5901016	5902707	+
GWHAAZE00000001	mRNA	5901016	5902707	+
GWHAAZE00000001	exon	5901016	5902707	+
GWHAAZE00000001	CDS	5901016	5902707	+

Transcript Sequence
>GWHTAAZE000299 ATGAGTCTAATTTCTCAAAATGTCATTCCGAAAGAACGAGTTGAGAAGATTAAGAGGAAGGCCCTTGACGAGCCTTCTTCATTCGTTGAAGAGAAAGAAGAGGTTGAAGATAAAAAGATATTTGATTTGGATACTTTGAAAACTAAGAAGAAAAAGAAAGAACGCGAGGAACAGAATGAGTTGGAAATTGAGCAGGATAAGGAAATGAAAAGACTCGAGAACTTCTTATTTGGCTCTTTGTACTCCCCCGTTGAGTTTGGGAAGGGTGAGGTGGAAGAAGTGAGAGAGGGGGCTGAAAATTCTGCATTATTCTTTACTGATCGGTCTGCTAATGGCGCGTTGTCTGTTTATGAAGAGGATGCAGAATTTCCTTTAGAAAGTAATGCTGAAGTGGAAAGTAAGCAAAGGAAACCTGTATGGGTTGATGAAGAGGAGGAGAAAACCAGTATAAATATAGCTAAAGTTAACAGGTTGAGGAAGTTGAGGAAAGAAGAGGATGAGAGCATAATTTCTGGCTCGGCTTACGTGTCAAGATTGAGGGCTCAACATGTTAAGCTGAACCCGAGCACCGAGTGGGCCCAACTTGATTCACAAGACAGAATGTACAACTCTGATGACGAAGAAAACGGGGCTGTTTTGGCCCAAGGGCACAAGGATGTTGGGGGTGTTGATGATATCCTTCGAACTAATGAAGATCTTGTTGTAAAGGGCAGTGGAAAGTTGCTGCCTGGACTTTTAGAGTACTCGAGGCTAGTTGATGCAAATGCAGAGGATCCTTCCAATGGCCCTATTACTTCGATTCAGTTTCATAGAAATGCTCAATTGCTTCTTGCTGGTGGATTGGATAAAAGACTCAGGTTTTTCCAGATTGATGGTAAACGAAACACCAAGATTCAAAGTGTGTTCATTGACGATTGTCCCATTCGAAAGGCTTCTTTCTTACCAGATGGGTCGCAGGTGATTGTAGCAGGAAGAAGAAAGTTCTTCTACAGCTTCGATTTAGTGAAGGCAAAGATGGACAAAATAGGCCCGTTAACTGGTAGGGAGGAGAAGAGCTTGGAATCTTTTGAGGTCTCACCCGATTCTAAAACAATTGCTTTTATTGGCAACGAAGGGTATATTTTGCTAGTTTCATCCAAAACGAAGGAACTGATTGGAACGCTCAAGATGAATGGAACTGTTCGTTCTTTATCTTTTGCGAACGATGGTCAAAAATTGCTGAGCTCAGGTGGTGACGGGCAGATTTATCATTGGGATTTGAGAACAAGGACTTGCTTTCATAAGGGTGTTGATGAAGGATGCATAAACGGCACAGCTCTTTGTACTTCTCCAAGTGGGAATTTGTTTGCTGCCGGTTCGGATAGTGGGATTGTGAACATTTACAATAATGATGATTTTTTAGGGGGCAAGAGAAAACCAATCAAAACGATTGAGAATCTGACCACAAAGGTGGATTTTATGAAATTCAACAATGATGCTCAGATTCTAGCCGTCAGTTCGAGCATGAAGAAAAATAGTTTGAAGCTGATTCACATTCCTTCCTTTACTGTTTTCTCAAACTGGCCACCGCCTAATCAGACCATACATTATCCTCGTTGTTTGGATTTCAGCCCCGGTGGTGGGTTCATGGCTATGGCGAATTCTGCCGGGAAAGTTTTATTATACAAGTTGCATCATTACCATCATGCATAG

Network for GWHGAAZE000299

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	262	288	0.17
PF00400.33	WD40	385	419	0.013
PF00400.33	WD40	435	462	0.037

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14553	UTP18	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.921
	SRR3591706	second leaf	1.756
	SRR3591707	mature leaf	1.376
	SRR3591708	Shoot apex	5.783
	SRR3591709	Stem	2.585
	SRR3591710	White floral bud	2.387
	SRR3591711	White flower	2.512
	SRR3591712	Green floral bud	4.815
	SRR3591713	Yellow flower	1.545
SRP173429	SRR8316895	Juvenile bud stage	3.413
	SRR8316896	Juvenile bud stage	5.002
	SRR8316897	Juvenile bud stage	1.800
	SRR8316894	Third green stage	1.672
	SRR8316900	Third green stage	7.277
	SRR8316901	Third green stage	6.035
	SRR8316898	Complete white stage	1.259
	SRR8316899	Complete white stage	5.880
	SRR8316903	Complete white stage	1.719
	SRR8316902	Silver flowering stage	0.996
	SRR8316904	Silver flowering stage	0.935
	SRR8316905	Silver flowering stage	0.653
	SRR8316906	Gold flowering stage	2.630
	SRR8316907	Gold flowering stage	2.299
	SRR8316908	Gold flowering stage	2.977
SRP132670	SRR6706286	Control	5.045
	SRR6706287	Light intensity 50%	5.178
	SRR6706288	Light intensity 20%	4.965
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.085
	CNS0095593	Slightly white alabastrum(diploid) 2	3.794
	CNS0095594	Slightly white alabastrum(diploid) 3	2.739
	CNS0095595	Whole white alabastrum(diploid) 2	2.683
	CNS0095596	Whole white alabastrum(diploid) 3	3.048
	CNS0095597	Whole white alabastrum(diploid) 4	1.627
	CNS0095598	Silvery flower (diploied) 1	4.490
	CNS0095599	Silvery flower (diploied) 2	3.279
	CNS0095600	Silvery flower (diploied) 3	3.150
	CNS0095601	Golden flower (diploid) 1	2.799
	CNS0095602	Golden flower (diploid) 2	3.556
	CNS0095603	Golden flower (diploid) 3	3.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.685
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.488
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.279
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.621
	CNS0095610	Silvery flower (tetraploid) 1	3.623
	CNS0095611	Silvery flower (tetraploid) 2	3.601
	CNS0095612	Silvery flower (tetraploid) 3	1.681
	CNS0095613	Golden flower (tetraploid) 1	2.057
	CNS0095614	Golden flower (tetraploid) 2	2.426
	CNS0095615	Golden flower (tetraploid) 3	1.008
CRA001975	CRR073297	Stem 1	4.979
	CRR073298	Stem 2	5.800
	CRR073299	Stem 3	4.631
	CRR073300	Leaf 1	4.620
	CRR073301	Leaf 2	4.100
	CRR073302	Leaf 3	4.620
	CRR073303	Juvenile bud 1	4.302
	CRR073304	Juvenile bud 2	2.169
	CRR073305	Juvenile bud 3	5.559
	CRR073306	Third green 1	0.216
	CRR073307	Third green 2	0.109
	CRR073308	Third green 3	0.139
	CRR073309	Second white 1	0.836
	CRR073310	Second white 2	0.780
	CRR073311	Second white 3	0.374
	CRR073312	Silver flowering 1	0.890
	CRR073313	Silver flowering 2	0.698
	CRR073314	Silver flowering 3	0.529
	CRR073315	Gold flowering 1	3.207
	CRR073316	Gold flowering 2	5.745
	CRR073317	Gold flowering 3	3.419
	CRR073318	Tawny withering 1	5.182
	CRR073319	Tawny withering 2	5.355
	CRR073320	Tawny withering 3	4.449