Detail information of GWHGAAZE000255


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002524742.105-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
COGYP_005441993.12E-91homocysteine S-methyltransferase
Swissprottr|Q9M1W4|HMT2_ARATH0Homocysteine S-methyltransferase 2
trEMBLtr|B9SFH3|B9SFH3_RICCO05-methyltetrahydrofolate:homocysteine methyltransferase, putative {ECO:0000313|EMBL:EEF37585.1}
TAIR10AT3G63250.15E-139homocysteine methyltransferase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene49738164979525-
GWHAAZE00000001mRNA49738164979525-
GWHAAZE00000001exon49738164973965-
GWHAAZE00000001exon49745854974656-
GWHAAZE00000001exon49754774975680-
GWHAAZE00000001exon49760284976157-
GWHAAZE00000001exon49765504976779-
GWHAAZE00000001exon49768644977015-
GWHAAZE00000001exon49775934977632-
GWHAAZE00000001exon49782244978405-
GWHAAZE00000001exon49793134979525-
GWHAAZE00000001five_prime_UTR49793134979525-
GWHAAZE00000001five_prime_UTR49783804978405-
GWHAAZE00000001CDS49782244978379-
GWHAAZE00000001CDS49775934977632-
GWHAAZE00000001CDS49768644977015-
GWHAAZE00000001CDS49765504976779-
GWHAAZE00000001CDS49760284976157-
GWHAAZE00000001CDS49754774975680-
GWHAAZE00000001CDS49745854974656-
GWHAAZE00000001CDS49738164973965-
Transcript Sequence

Network for GWHGAAZE000255

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02574.17S-methyl_trans173708.40E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00547mmuM, BHMT2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.515
SRR3591706second leaf6.150
SRR3591707mature leaf6.058
SRR3591708Shoot apex13.705
SRR3591709Stem10.739
SRR3591710White floral bud8.427
SRR3591711White flower9.966
SRR3591712Green floral bud11.852
SRR3591713Yellow flower7.601
SRP173429 SRR8316895Juvenile bud stage 7.958
SRR8316896Juvenile bud stage 8.866
SRR8316897Juvenile bud stage 5.929
SRR8316894Third green stage 5.981
SRR8316900Third green stage 17.201
SRR8316901Third green stage 15.560
SRR8316898Complete white stage 3.067
SRR8316899Complete white stage 16.316
SRR8316903Complete white stage 3.985
SRR8316902Silver flowering stage1.189
SRR8316904Silver flowering stage2.583
SRR8316905Silver flowering stage0.984
SRR8316906Gold flowering stage 3.782
SRR8316907Gold flowering stage 3.395
SRR8316908Gold flowering stage 5.183
SRP132670SRR6706286Control12.099
SRR6706287Light intensity 50%13.665
SRR6706288Light intensity 20%17.620
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.733
CNS0095593Slightly white alabastrum(diploid) 27.422
CNS0095594Slightly white alabastrum(diploid) 37.286
CNS0095595Whole white alabastrum(diploid) 27.279
CNS0095596Whole white alabastrum(diploid) 38.099
CNS0095597Whole white alabastrum(diploid) 45.237
CNS0095598Silvery flower (diploied) 17.354
CNS0095599Silvery flower (diploied) 26.883
CNS0095600Silvery flower (diploied) 33.746
CNS0095601Golden flower (diploid) 15.475
CNS0095602Golden flower (diploid) 26.640
CNS0095603Golden flower (diploid) 33.748
CNS0095604Slightly white alabastrum(tetraploid) 16.895
CNS0095605Slightly white alabastrum(tetraploid) 25.423
CNS0095606Slightly white alabastrum(tetraploid) 310.678
CNS0095607Whole white alabastrum(tetraploid) 13.486
CNS0095608Whole white alabastrum(tetraploid) 24.865
CNS0095609Whole white alabastrum(tetraploid) 38.699
CNS0095610Silvery flower (tetraploid) 14.511
CNS0095611Silvery flower (tetraploid) 24.162
CNS0095612Silvery flower (tetraploid) 32.446
CNS0095613Golden flower (tetraploid) 12.004
CNS0095614Golden flower (tetraploid) 25.329
CNS0095615Golden flower (tetraploid) 32.924
CRA001975CRR073297Stem 110.874
CRR073298Stem 28.437
CRR073299Stem 38.528
CRR073300Leaf 110.254
CRR073301Leaf 29.729
CRR073302Leaf 314.145
CRR073303Juvenile bud 16.686
CRR073304Juvenile bud 26.034
CRR073305Juvenile bud 36.845
CRR073306Third green 10.631
CRR073307Third green 20.898
CRR073308Third green 30.434
CRR073309Second white 10.418
CRR073310Second white 20.108
CRR073311Second white 30.547
CRR073312Silver flowering 10.576
CRR073313Silver flowering 20.107
CRR073314Silver flowering 30.407
CRR073315Gold flowering 14.112
CRR073316Gold flowering 24.179
CRR073317Gold flowering 32.094
CRR073318Tawny withering 15.949
CRR073319Tawny withering 22.847
CRR073320Tawny withering 36.176