Gene detail

Detail information of GWHGAAZE000228

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008235248.1	6.6663E-130	PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Prunus mume]
COG	YP_003203264.1	4E-28	tRNA delta(2)-isopentenylpyrophosphate transferase
Swissprot	tr\|Q93WC9\|IPT3_ARATH	1E-112	Adenylate isopentenyltransferase 3, chloroplastic (Precursor)
trEMBL	tr\|I1VWI6\|I1VWI6_CHRMO	1E-128	Isopentenyl transferases protein {ECO:0000313\|EMBL:AFI49626.1}
TAIR10	AT3G63110.1	3E-83	isopentenyltransferase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4535207	4536160	-
GWHAAZE00000001	mRNA	4535207	4536160	-
GWHAAZE00000001	exon	4535207	4536160	-
GWHAAZE00000001	CDS	4535207	4536160	-

Transcript Sequence
>GWHTAAZE000228 ATGACCAAGTTCATGTGCAAAAACACACTACCATTACTCAACATTCCCGGCAGTGGCCTCGACATGCCGGCACTCCGATCCCGGCAACAAAAAGACAAGGTCGTGGTAGTAATGGGAGCCACTGGAACCGGCAAATCGAGACTTTCAATCGACCTAGCAACACATTTTCCGGCGGAGGTAGTGAACTCCGACAAAATGCAAGTCTATCAAGGCCTCGACATAGTCACGAACAAAATTAGTGACAAAGAGCGCCGTGGTGTCCCACATCACTTGTTAGGCATCACAGATCCCAACACAGATTTCACCGTCACAAATTTCTGCGATTCCGCCTCACTAGCTATTAAATCAATACTTCACCGGCGAAAACTCCCGGTGATCGCCGGCGGTTCGAACTCGTTCATCGAAGCATTAATCGACGATCCAGATTACGAGTTTATGTCGAGATATGATTGCATTTTCCTATGGGTGGACGTGGCAGTTCCAGTACTCGACCCGATGTTGTCGGACCGGGTCGATAAATTGATCGAGATTGGAATGATTGAGGAAGTTAAAGAAATTTTCGACCCTCTTAATTGCGACTACTCGAAGGGATATAGGCGTGCCATTGGCGTGCCTGAATTGGATCATTATTTCAGGGCGAAATGTGATCGCGAGCGGATATTAAGAGAAGCCATTGAGGAGATTAAGGTGAATACGTGTAAATTGGCACGTAGGCAGTTGGGGAAGATTAATAGATTGAGGAGTGTGAAGGGGTGGAAGTTTCAAAGGATTGATGCGACGAAGGTATTTACAAAGAGCGGCGGAGAGGCGGAGGAGAAGTGGGAGGAGATGGTTGTGGAGCCGAGCGTGGCGATTGTGAGCCGGTTTCTTAATAATTTTGGGCGGAAGAATATGGTGGTGAATAGGAGAAGAGGTGGTGCAATGGAGATGGCGTTGGCTGCAGTTTCTTATTAA

Network for GWHGAAZE000228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01715.18	IPPT	67	140	1.70E-21
PF01715.18	IPPT	147	240	1.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10760	IPT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.414
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	4.819
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.711
	SRR3591710	White floral bud	1.361
	SRR3591711	White flower	6.433
	SRR3591712	Green floral bud	0.809
	SRR3591713	Yellow flower	0.166
SRP173429	SRR8316895	Juvenile bud stage	0.271
	SRR8316896	Juvenile bud stage	0.354
	SRR8316897	Juvenile bud stage	1.453
	SRR8316894	Third green stage	0.260
	SRR8316900	Third green stage	3.040
	SRR8316901	Third green stage	3.596
	SRR8316898	Complete white stage	0.477
	SRR8316899	Complete white stage	1.340
	SRR8316903	Complete white stage	0.594
	SRR8316902	Silver flowering stage	0.970
	SRR8316904	Silver flowering stage	0.468
	SRR8316905	Silver flowering stage	0.349
	SRR8316906	Gold flowering stage	0.789
	SRR8316907	Gold flowering stage	0.810
	SRR8316908	Gold flowering stage	0.608
SRP132670	SRR6706286	Control	5.054
	SRR6706287	Light intensity 50%	1.818
	SRR6706288	Light intensity 20%	1.710
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.425
	CNS0095593	Slightly white alabastrum(diploid) 2	1.756
	CNS0095594	Slightly white alabastrum(diploid) 3	0.815
	CNS0095595	Whole white alabastrum(diploid) 2	1.447
	CNS0095596	Whole white alabastrum(diploid) 3	1.333
	CNS0095597	Whole white alabastrum(diploid) 4	1.879
	CNS0095598	Silvery flower (diploied) 1	12.895
	CNS0095599	Silvery flower (diploied) 2	11.419
	CNS0095600	Silvery flower (diploied) 3	3.899
	CNS0095601	Golden flower (diploid) 1	2.243
	CNS0095602	Golden flower (diploid) 2	0.890
	CNS0095603	Golden flower (diploid) 3	0.888
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.048
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.310
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.978
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.361
	CNS0095610	Silvery flower (tetraploid) 1	0.449
	CNS0095611	Silvery flower (tetraploid) 2	0.517
	CNS0095612	Silvery flower (tetraploid) 3	0.227
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.138
	CRR073298	Stem 2	0.437
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.534
	CRR073301	Leaf 2	1.613
	CRR073302	Leaf 3	0.967
	CRR073303	Juvenile bud 1	2.114
	CRR073304	Juvenile bud 2	0.313
	CRR073305	Juvenile bud 3	2.865
	CRR073306	Third green 1	1.161
	CRR073307	Third green 2	1.501
	CRR073308	Third green 3	0.499
	CRR073309	Second white 1	0.218
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	21.045
	CRR073316	Gold flowering 2	18.050
	CRR073317	Gold flowering 3	9.820
	CRR073318	Tawny withering 1	45.696
	CRR073319	Tawny withering 2	36.215
	CRR073320	Tawny withering 3	55.462