Gene detail

Detail information of GWHGAAZE000176

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007201217.1	0	hypothetical protein PRUPE_ppa001001mg [Prunus persica]
COG	NP_070126.1	3E-81	cell division protein CDC48
Swissprot	tr\|Q8RY16\|PEX6_ARATH	0	Peroxisome biogenesis protein 6
trEMBL	tr\|M5VNF2\|M5VNF2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02416.1}
TAIR10	AT1G03000.1	0	peroxin 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3604709	3613419	-
GWHAAZE00000001	mRNA	3604709	3613419	-
GWHAAZE00000001	exon	3604709	3604798	-
GWHAAZE00000001	exon	3605225	3605305	-
GWHAAZE00000001	exon	3607174	3607318	-
GWHAAZE00000001	exon	3607399	3607520	-
GWHAAZE00000001	exon	3607628	3607666	-
GWHAAZE00000001	exon	3608007	3608108	-
GWHAAZE00000001	exon	3608240	3608362	-
GWHAAZE00000001	exon	3608489	3608575	-
GWHAAZE00000001	exon	3609036	3609107	-
GWHAAZE00000001	exon	3609297	3609587	-
GWHAAZE00000001	exon	3609952	3610143	-
GWHAAZE00000001	exon	3610333	3610516	-
GWHAAZE00000001	exon	3610830	3610971	-
GWHAAZE00000001	exon	3611142	3611385	-
GWHAAZE00000001	exon	3611476	3612111	-
GWHAAZE00000001	exon	3613129	3613419	-
GWHAAZE00000001	CDS	3613129	3613419	-
GWHAAZE00000001	CDS	3611476	3612111	-
GWHAAZE00000001	CDS	3611142	3611385	-
GWHAAZE00000001	CDS	3610830	3610971	-
GWHAAZE00000001	CDS	3610333	3610516	-
GWHAAZE00000001	CDS	3609952	3610143	-
GWHAAZE00000001	CDS	3609297	3609587	-
GWHAAZE00000001	CDS	3609036	3609107	-
GWHAAZE00000001	CDS	3608489	3608575	-
GWHAAZE00000001	CDS	3608240	3608362	-
GWHAAZE00000001	CDS	3608007	3608108	-
GWHAAZE00000001	CDS	3607628	3607666	-
GWHAAZE00000001	CDS	3607399	3607520	-
GWHAAZE00000001	CDS	3607174	3607318	-
GWHAAZE00000001	CDS	3605225	3605305	-
GWHAAZE00000001	CDS	3604709	3604798	-

Transcript Sequence
>GWHTAAZE000176 ATGGTGGAGAGAGGAAGAAGGAAGCCTCTGGTGCTTTCTTCCACCAAAGCTCTCCTCAATTCCCTACTACTTTCTTCCTCCTCAATAACCAACCAACGTGATGATGGAATTGATCCATCATCTACCGCCAACTGTCTTCTACAGTTACCGGCGGGAATTCTTCGTTTTTCATTCAAGGAGGATCAAACTCTCATTTCTTCGCTCCCGAATTTGGTCTCTTTCGACGATGCTGTGTTGGTTGGCCTGTCCACCTCTGCTCTCAAAAGCTTATCCATTACTTCCGGCTCCCTGGTACTTGTCAAGAATTTTGAGACCAGCATCCAGAGAATTGGACAAGCTGTTGTTCTAGATCCTCCCAGCACTCACGAAGACTTGGTGGACGATAAATTACGCTCAAGTAAATCCATGCGGCCAACGCTCATCTTTCCGTCATATAATTTCCCTCAAACTAAACGAGTACCGTTGATTCCCGAGGTTGCTTATCTGTCTCCTCTTCTGGCGTTTAACCTTAACTTGCATGTATCGTGTTTCAAATCTCTTGTTCACCAAGGGAAAGATGCTTTGGCATCATTGTTTGAATTTAAAGATGATGATGAAACAAATGAGAAAGGGAGCCAGGAGTCTGCTATCAATTTACATCTTGAACCTTGGCCTCATTCTCCAAGATATGCATCACATTTGAGGGCTTCTTTTGTGAAGATACCGGAATGTGGTATCCTTGAATCTCTTAAAGGAAGCTCATCTATTGAAGCTGAAGACCGTCAAGAAATGATAGATTTAGCGTTGAATAAGTACTTTGAAATAGATCGATATCTTGCCAGAGGGGATCTTTTCAGCATATCCATCAACTGGAATTGCAAATCAGCTATGTGCATTGCTTGCCTCCAACGGAAGCAAAATTCCTGTGACACCATCATCTACTTCAAGGTTGTGGCTATGGAGCCTTCAGATGAACCTGTTGTTAGAGTTAATCGCACTAAAACGGCTCTTGTGCTTGGAGGGAGTGTTCCTTCTGCTGTTCCCCCAGATCTTCTAATTGACAGATCAAAAGATTTCATGCCTTTACAGGGGGACACAGTAAAGATTCTGGCATCCATACTTACACCTCCTTTATGTCCGTCGGCACTTTCGTCAAAATTCAGAGTTGCTGTTCTGCTGTATGGTTTGCCTGGGTGTGGGAAGAGGACTGTGGTTAAGTATGTTGCTCATCGGCTGGGGCTGCATGTTGTGGAATATAGTTGTCACAATCTAATGTCATCTTCCGAAAGAAAGACATCTGCAATGCTATCTCAGGCTTTCACTGCAGCTCGCAGATACTCCCCAACCATTCTTCTTCTCCGCCATTTTGATGTTTTCCGCAATCTGGTCTCTCACGAGGTTTCACCCCAGGATCAAGTTGGTGTTAACTCTGAAGTGGCATCCATTCTTAGGAAATTCACAGAACCACTTAGTGAAGATGATGACGACTATTATGAAGAGGAACCAAATGGTGATTCCCTAGAAAAGGGTATGGGAAAGATATGCAGGCATCCCGTACTGTTAATTGCAGCTTTTGACAGTTCCGAAGGGCTGCCACCTACCATTAGGCGTTGTTTTAGCCATGAAGTTAGTATGGGACCTTTGACTGAAGAACAAAGGGTTCAAATGCTGTCCCAATCTCTTCAACATGTGTCTGAACTGCTCCCAAATGCTGCTTCAGAGGACCTTATCAAAGACATTGTTGGACAGACATCTGGTTTCATGCCTAGGGATATAAATGCTTTAATTGCTGATGCTGGTGCAAATTTAATTCCTCGGCATGGAATTCAATGCAACAAAGATGAGCCCAGAAATTTGGGTGAGAATGGTTCTCTTGGGTTCAAACCAGGAGAGGATAATAGGTCAACCAATGAGACACCTGCGGTTCTGGGGAAAGATGATTTAGCCAAAGCATTGGAGCAATCAAAGAAAAGGAATGCCACAGCACTGGGAACTCCCAAGGTTCCTAATGTGAAATGGGAGGATGTTGGTGGGCTTGAGGATGTGAAGAAATCAATTCTGGATACTGTTCAGCTGCCTCTCATGCATAAGGATTTGTTTTCCTCTGGGTTGCGCAAGCGCTCTGGTGTTCTTTTATATGGTCCTCCTGGGACAGGGAAAACTCTATTAGCGAAAGCTGTTGCAACAGAGTGCTCCCTTAACTTTCTCAGTGTTAAAGGGCCTGAATTGATCAACATGTACATTGGAGAATCGGAAAAAAATGTGCGAGACATTTTTCAGAAGGCCAGATCAGCACGTCCGTGTGTCATTTTCTTTGATGAGCTTGATTCTCTTGCTCCTGCCAGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGATCGTGTGATGCTTGCAGAGATTGATGGCCTGAACGACTCTTCCCAGGACTTGTTTATAATAGGAGCCAGCAACAGACCAGATCTTATTGACCCAGCACTTCTAAGGCCTGGCCGATTTGATAAGCTCCTCTATGTTGGAGTTAATACGGATACATTTTATAGGGAGAGGGTACTAAAAGCACTTACCCGCAAGTTCAAATTGCATGACGATGTATCACTTCATGCAATAGCAAAGAAATGTCCACCAAACTTCACTGGCGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGAAAGGCTTTAGCTCCTAATTCCGATTCAAGTGGCACGGAAGAAGAAGCTGATTCTGTTGTCGTGGAATATGAGGATTTTGTGAAGGTTGTAGGAGAGCTCTCTCCGTCACTGTCTATGGCGGAGCTGAAGAAGTATGAGTTACTGCGAGATCAGTTTGAAGGAGCTTCAAGATGA

Network for GWHGAAZE000176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	384	536	7.10E-13
PF00004.30	AAA	703	832	1.40E-43
PF17862.2	AAA_lid_3	856	892	5.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13339	PEX6, PXAAA1	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.501
	SRR3591706	second leaf	11.509
	SRR3591707	mature leaf	14.218
	SRR3591708	Shoot apex	16.870
	SRR3591709	Stem	16.140
	SRR3591710	White floral bud	15.717
	SRR3591711	White flower	17.278
	SRR3591712	Green floral bud	12.272
	SRR3591713	Yellow flower	14.137
SRP173429	SRR8316895	Juvenile bud stage	9.317
	SRR8316896	Juvenile bud stage	11.150
	SRR8316897	Juvenile bud stage	7.389
	SRR8316894	Third green stage	6.042
	SRR8316900	Third green stage	11.004
	SRR8316901	Third green stage	11.977
	SRR8316898	Complete white stage	4.171
	SRR8316899	Complete white stage	16.984
	SRR8316903	Complete white stage	10.300
	SRR8316902	Silver flowering stage	5.414
	SRR8316904	Silver flowering stage	8.331
	SRR8316905	Silver flowering stage	3.647
	SRR8316906	Gold flowering stage	13.021
	SRR8316907	Gold flowering stage	12.819
	SRR8316908	Gold flowering stage	12.583
SRP132670	SRR6706286	Control	12.490
	SRR6706287	Light intensity 50%	12.502
	SRR6706288	Light intensity 20%	13.677
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.273
	CNS0095593	Slightly white alabastrum(diploid) 2	7.158
	CNS0095594	Slightly white alabastrum(diploid) 3	5.307
	CNS0095595	Whole white alabastrum(diploid) 2	6.369
	CNS0095596	Whole white alabastrum(diploid) 3	5.670
	CNS0095597	Whole white alabastrum(diploid) 4	5.001
	CNS0095598	Silvery flower (diploied) 1	11.759
	CNS0095599	Silvery flower (diploied) 2	9.032
	CNS0095600	Silvery flower (diploied) 3	15.394
	CNS0095601	Golden flower (diploid) 1	10.562
	CNS0095602	Golden flower (diploid) 2	16.527
	CNS0095603	Golden flower (diploid) 3	15.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.504
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.954
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.210
	CNS0095610	Silvery flower (tetraploid) 1	17.666
	CNS0095611	Silvery flower (tetraploid) 2	20.937
	CNS0095612	Silvery flower (tetraploid) 3	16.629
	CNS0095613	Golden flower (tetraploid) 1	8.096
	CNS0095614	Golden flower (tetraploid) 2	14.296
	CNS0095615	Golden flower (tetraploid) 3	12.621
CRA001975	CRR073297	Stem 1	16.346
	CRR073298	Stem 2	13.968
	CRR073299	Stem 3	13.003
	CRR073300	Leaf 1	14.746
	CRR073301	Leaf 2	14.434
	CRR073302	Leaf 3	12.899
	CRR073303	Juvenile bud 1	11.384
	CRR073304	Juvenile bud 2	6.836
	CRR073305	Juvenile bud 3	15.405
	CRR073306	Third green 1	3.795
	CRR073307	Third green 2	3.754
	CRR073308	Third green 3	4.042
	CRR073309	Second white 1	5.394
	CRR073310	Second white 2	5.827
	CRR073311	Second white 3	8.046
	CRR073312	Silver flowering 1	5.224
	CRR073313	Silver flowering 2	5.012
	CRR073314	Silver flowering 3	3.670
	CRR073315	Gold flowering 1	9.589
	CRR073316	Gold flowering 2	14.630
	CRR073317	Gold flowering 3	7.682
	CRR073318	Tawny withering 1	11.048
	CRR073319	Tawny withering 2	9.614
	CRR073320	Tawny withering 3	9.012