Detail information of GWHGAAZE000116


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006444406.10hypothetical protein CICLE_v10018801mg [Citrus clementina]
COGYP_003683826.12E-149(p)ppGpp synthetase I SpoT/RelA
Swissprottr|P0DKG8|RSH1L_ARATH0Putative GTP diphosphokinase RSH1, chloroplastic (Precursor)
trEMBLtr|V4U680|V4U680_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR57646.1}
TAIR10AT4G02260.20RELA/SPOT homolog 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene22498652259145-
GWHAAZE00000001mRNA22498652259145-
GWHAAZE00000001exon22498652249969-
GWHAAZE00000001exon22500552250123-
GWHAAZE00000001exon22502202250281-
GWHAAZE00000001exon22521052252573-
GWHAAZE00000001exon22526682252754-
GWHAAZE00000001exon22529682253039-
GWHAAZE00000001exon22531282253214-
GWHAAZE00000001exon22532962253427-
GWHAAZE00000001exon22535382253696-
GWHAAZE00000001exon22539012254002-
GWHAAZE00000001exon22541022254158-
GWHAAZE00000001exon22543062254368-
GWHAAZE00000001exon22544672254527-
GWHAAZE00000001exon22555832255680-
GWHAAZE00000001exon22558882255995-
GWHAAZE00000001exon22561052256176-
GWHAAZE00000001exon22562512256328-
GWHAAZE00000001exon22566392256770-
GWHAAZE00000001exon22568752256967-
GWHAAZE00000001exon22570502257115-
GWHAAZE00000001exon22574532257629-
GWHAAZE00000001exon22588412259016-
GWHAAZE00000001exon22591212259145-
GWHAAZE00000001CDS22591212259145-
GWHAAZE00000001CDS22588412259016-
GWHAAZE00000001CDS22574532257629-
GWHAAZE00000001CDS22570502257115-
GWHAAZE00000001CDS22568752256967-
GWHAAZE00000001CDS22566392256770-
GWHAAZE00000001CDS22562512256328-
GWHAAZE00000001CDS22561052256176-
GWHAAZE00000001CDS22558882255995-
GWHAAZE00000001CDS22555832255680-
GWHAAZE00000001CDS22544672254527-
GWHAAZE00000001CDS22543062254368-
GWHAAZE00000001CDS22541022254158-
GWHAAZE00000001CDS22539012254002-
GWHAAZE00000001CDS22535382253696-
GWHAAZE00000001CDS22532962253427-
GWHAAZE00000001CDS22531282253214-
GWHAAZE00000001CDS22529682253039-
GWHAAZE00000001CDS22526682252754-
GWHAAZE00000001CDS22521052252573-
GWHAAZE00000001CDS22502202250281-
GWHAAZE00000001CDS22500552250123-
GWHAAZE00000001CDS22498652249969-
Transcript Sequence

Network for GWHGAAZE000116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13328.7HD_41462241.00E-16
PF04607.18RelA_SpoT3384544.30E-19
PF02824.22TGS5255848.30E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00951relA Metabolic pathways map01100
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0015969biological_processguanosine tetraphosphate metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.338
SRR3591706second leaf61.374
SRR3591707mature leaf120.573
SRR3591708Shoot apex26.203
SRR3591709Stem20.875
SRR3591710White floral bud26.179
SRR3591711White flower23.251
SRR3591712Green floral bud17.965
SRR3591713Yellow flower50.007
SRP173429 SRR8316895Juvenile bud stage 14.672
SRR8316896Juvenile bud stage 17.058
SRR8316897Juvenile bud stage 12.317
SRR8316894Third green stage 8.416
SRR8316900Third green stage 20.410
SRR8316901Third green stage 17.541
SRR8316898Complete white stage 8.926
SRR8316899Complete white stage 19.369
SRR8316903Complete white stage 17.391
SRR8316902Silver flowering stage16.346
SRR8316904Silver flowering stage23.361
SRR8316905Silver flowering stage11.456
SRR8316906Gold flowering stage 25.347
SRR8316907Gold flowering stage 20.258
SRR8316908Gold flowering stage 23.820
SRP132670SRR6706286Control12.861
SRR6706287Light intensity 50%12.019
SRR6706288Light intensity 20%13.450
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.644
CNS0095593Slightly white alabastrum(diploid) 212.144
CNS0095594Slightly white alabastrum(diploid) 39.756
CNS0095595Whole white alabastrum(diploid) 29.201
CNS0095596Whole white alabastrum(diploid) 38.035
CNS0095597Whole white alabastrum(diploid) 47.608
CNS0095598Silvery flower (diploied) 126.115
CNS0095599Silvery flower (diploied) 220.322
CNS0095600Silvery flower (diploied) 320.270
CNS0095601Golden flower (diploid) 123.198
CNS0095602Golden flower (diploid) 224.126
CNS0095603Golden flower (diploid) 322.445
CNS0095604Slightly white alabastrum(tetraploid) 114.593
CNS0095605Slightly white alabastrum(tetraploid) 212.844
CNS0095606Slightly white alabastrum(tetraploid) 326.026
CNS0095607Whole white alabastrum(tetraploid) 18.864
CNS0095608Whole white alabastrum(tetraploid) 26.973
CNS0095609Whole white alabastrum(tetraploid) 318.584
CNS0095610Silvery flower (tetraploid) 126.349
CNS0095611Silvery flower (tetraploid) 229.377
CNS0095612Silvery flower (tetraploid) 364.645
CNS0095613Golden flower (tetraploid) 116.152
CNS0095614Golden flower (tetraploid) 223.482
CNS0095615Golden flower (tetraploid) 317.212
CRA001975CRR073297Stem 116.027
CRR073298Stem 212.122
CRR073299Stem 37.702
CRR073300Leaf 19.614
CRR073301Leaf 27.789
CRR073302Leaf 34.939
CRR073303Juvenile bud 15.226
CRR073304Juvenile bud 22.805
CRR073305Juvenile bud 34.802
CRR073306Third green 172.901
CRR073307Third green 230.986
CRR073308Third green 348.343
CRR073309Second white 116.023
CRR073310Second white 238.035
CRR073311Second white 317.882
CRR073312Silver flowering 14.199
CRR073313Silver flowering 23.161
CRR073314Silver flowering 34.080
CRR073315Gold flowering 121.794
CRR073316Gold flowering 243.797
CRR073317Gold flowering 312.111
CRR073318Tawny withering 18.728
CRR073319Tawny withering 210.505
CRR073320Tawny withering 37.963