Gene detail

Detail information of GWHGAAZE000096

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652225.1	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Vitis vinifera]
Swissprot	tr\|Q9SY66\|FRS11_ARATH	Protein FAR1-RELATED SEQUENCE 11
trEMBL	tr\|F6HZ84\|F6HZ84_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59999.1}
TAIR10	AT1G10240.1	FAR1-related sequence 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2037006	2040968	+
GWHAAZE00000001	mRNA	2037006	2040968	+
GWHAAZE00000001	exon	2037006	2037017	+
GWHAAZE00000001	exon	2037813	2038820	+
GWHAAZE00000001	exon	2039297	2039740	+
GWHAAZE00000001	exon	2040084	2040968	+
GWHAAZE00000001	CDS	2037006	2037017	+
GWHAAZE00000001	CDS	2037813	2038820	+
GWHAAZE00000001	CDS	2039297	2039740	+
GWHAAZE00000001	CDS	2040084	2040968	+

Transcript Sequence
>GWHTAAZE000096 ATGAATGAGATTGTTTCATATTGGGAGTTTCGCTTACCTTCTGTTGTTATAATGCCTGAGATCACAAGTATAGTGAAAGAAACTTCTGAAAATGGTACAGATTTGTCCCCAGATGATATTGGCAGTTTCGAGGAAATGCCCGAGGACACAATCTTGTCACGGCAAACTTCTGTGAATCTTGTTCCATTTATGGGCCAGAGATTTGTCTCACAAGACGCTGCCTATGAATTTTATTGCAGCTTTGCAAAGCAATGTGGCTTCTCAATCAGGCGCCATCGTACTCGAGGAAAAGATGGTGTAGGCAGGGGAATTACGAGAAGGGATTTCACTTGCCACCGTGGAGGCTATCCTCAATTAAAGCCATCGGAGGATGGAAAGCTACAGAGGAATAGAAAATCATCACGTTGTGGCTGTCAAGCATACATGAGAATTGTTAAGAGGGCGGATTTTGATGTGCCTGAATGGCGTATCACTGGTTTTAGCAACGTCCACAACCATGAACTCTTGAAGTCAAGTGAGGTGCAGCTACCTCCTGCTTACTGCACCATGTCTGCTGATGACAAGAGTCGTATATGCATGTTTGCAAAAGCTGGGATGTCAGTGCGACAAATGCTAAGGCTAATGGAGCTAGAGAAGGGTGTTAAGCTAGGCTGTTTACCATTCACAGAAATAGATGTGAGAAACCTGCTGCAATCCTTTAGAAATGTGGATCGAGATAACGATGCTATTGACCTTCTTAAAATGTGCAAGGAAAAGAAGGATAAAGATCCCAATTTCAAATACAACTTCAAGATAGATGCTAATAACAGGTTGGAGCATATTGCATGGTCATATGCTTCATCAATCAGATCATATGAGGCTTTTGGAGATTCTGTAGTGTTTGACACAACCCACCGCTTGGATGCTTTTGATATGATTTTAGGGATTTGGATTGGAGTGGACAATCATGGAATGAATTGTTTCTTTGGATGTGCGCTTTTAAGGGATGAGAATATCCAATCTTTCTCCTGGGCATTAAAGACATTTTTGGGCTTTGTGAACGGAAAGGCTCCGGAAACAATTTTAACTGATCAAAACATGTGGCTCAAGGAAGCAGTTGCTATTGAAATGCCAAAGACCAAGCATGCCTTTTGCATTTGGCATATCATTTCAAAGTTTTCGGATTGGTTTTCGGTACTCCTTGGTTCGCAATATGGTAAATGGAAGGCTGAGTTCCATCGGATTTATGACTTGCACTCGGTGGAGGAATTTGAAGTAGGATGGAGAGAGATGGTTGAAATATATGGACTGCATGGAAATAAGCACATTGTTAGCTTGTATGCCTTGCGTACATTTTGGGCACTACCATTCTTGAGATGTTACTTCTTTGCGGGAATGACAAGTACTGTTCAATCAGAATCAATAAATGCTTATATCCAACGGTTTTTAAGTACACAATCCATACTTGAGAATTTCATTGAGCAGATAGCTGCAGTTGTAGATGCCAAAGATCAAGCGGGAGCAAAGCAAAAGATGCAATGGAAGGTCAACAAAGTTTCCCTCAAAACGGGTTCACCAATCGAATCACATGCTGCTGCTGTTCTCACACCATATGCCTTTTGCAAACTACAAGAGGAACTTGTATTGGCACCTCAATATGCTTCGCTAATGGTGGATGAAAGTTACTTTGTTGTGAGACACCATACAGAGATGGATGGTGGATGTAAAGTACTTTGGGTCCCTCATGATGAGTTCATTAGCTGTAGTTGCCATCACTTTGAATTTTCAGGCATACTCTGTCGACACGTTCTACGTGTCATTTCGACAAACAACTGTTTTCATATTCCAGATCAATATCTACCCATTCGTTGGCGTGATATTGCCTCCTCGTCTTTAACGAAATCAGTCCATACTTATACTTCAACAGAGCATACGGGTAGAGTCCAGTTGTTACAGTCCATGGTATCAACACTGATTACAGAGTCGATTGAAACAGAGGAGCGACTTGACGTTGCTTGCAATCAAATTGCAATGGCGTTGAATCGCATCAAAGAATTTCCTGGGCAGTTGCATGGTGCGAACGATACAGCTTATAATAGCCCGTCAGACTCGTTGATTCTTCCGGAAGTTGAAGATTCAGATAGTATTGTTCAAAGTTTCACTGGGAATCCGCATGAAGCTTTAACTCTAGGAAAGTTGAAAGAGAGAAGGTCAAGAGATGGGATAGATATTTACAGGAAACGAAGGCGTTGCTCTGTGCCTTGCTGTGGGCAGTTTGGTCATGATGCTACTGACTGCCCGATGATGGAAGGTGATGATATGAACGGAGACGGGCTAGGGTTTTTGTATGCGACAGCTGGAAAAGGTTAG

Network for GWHGAAZE000096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.16	FAR1	76	169	3.00E-18
PF10551.10	MULE	292	384	1.70E-19
PF04434.18	SWIM	577	601	2.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.975
	SRR3591706	second leaf	7.503
	SRR3591707	mature leaf	8.370
	SRR3591708	Shoot apex	15.090
	SRR3591709	Stem	12.977
	SRR3591710	White floral bud	11.692
	SRR3591711	White flower	12.604
	SRR3591712	Green floral bud	15.845
	SRR3591713	Yellow flower	13.116
SRP173429	SRR8316895	Juvenile bud stage	7.951
	SRR8316896	Juvenile bud stage	11.613
	SRR8316897	Juvenile bud stage	5.835
	SRR8316894	Third green stage	4.584
	SRR8316900	Third green stage	12.919
	SRR8316901	Third green stage	12.005
	SRR8316898	Complete white stage	3.813
	SRR8316899	Complete white stage	16.502
	SRR8316903	Complete white stage	6.926
	SRR8316902	Silver flowering stage	3.772
	SRR8316904	Silver flowering stage	6.580
	SRR8316905	Silver flowering stage	2.997
	SRR8316906	Gold flowering stage	9.207
	SRR8316907	Gold flowering stage	7.280
	SRR8316908	Gold flowering stage	9.445
SRP132670	SRR6706286	Control	7.590
	SRR6706287	Light intensity 50%	7.897
	SRR6706288	Light intensity 20%	8.616
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.710
	CNS0095593	Slightly white alabastrum(diploid) 2	6.305
	CNS0095594	Slightly white alabastrum(diploid) 3	6.063
	CNS0095595	Whole white alabastrum(diploid) 2	7.869
	CNS0095596	Whole white alabastrum(diploid) 3	7.703
	CNS0095597	Whole white alabastrum(diploid) 4	8.760
	CNS0095598	Silvery flower (diploied) 1	11.595
	CNS0095599	Silvery flower (diploied) 2	8.918
	CNS0095600	Silvery flower (diploied) 3	16.035
	CNS0095601	Golden flower (diploid) 1	13.385
	CNS0095602	Golden flower (diploid) 2	19.761
	CNS0095603	Golden flower (diploid) 3	18.430
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.969
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.650
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.632
	CNS0095610	Silvery flower (tetraploid) 1	14.201
	CNS0095611	Silvery flower (tetraploid) 2	14.014
	CNS0095612	Silvery flower (tetraploid) 3	13.012
	CNS0095613	Golden flower (tetraploid) 1	8.966
	CNS0095614	Golden flower (tetraploid) 2	12.081
	CNS0095615	Golden flower (tetraploid) 3	13.052
CRA001975	CRR073297	Stem 1	13.144
	CRR073298	Stem 2	9.899
	CRR073299	Stem 3	9.125
	CRR073300	Leaf 1	14.361
	CRR073301	Leaf 2	12.118
	CRR073302	Leaf 3	9.555
	CRR073303	Juvenile bud 1	8.820
	CRR073304	Juvenile bud 2	9.303
	CRR073305	Juvenile bud 3	10.023
	CRR073306	Third green 1	5.962
	CRR073307	Third green 2	3.759
	CRR073308	Third green 3	3.818
	CRR073309	Second white 1	4.812
	CRR073310	Second white 2	4.578
	CRR073311	Second white 3	5.373
	CRR073312	Silver flowering 1	3.000
	CRR073313	Silver flowering 2	4.720
	CRR073314	Silver flowering 3	3.532
	CRR073315	Gold flowering 1	3.941
	CRR073316	Gold flowering 2	7.370
	CRR073317	Gold flowering 3	5.429
	CRR073318	Tawny withering 1	9.443
	CRR073319	Tawny withering 2	8.417
	CRR073320	Tawny withering 3	7.830