Gene detail

Detail information of GWHGAAZE000091

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002269885.1	PREDICTED: CTP synthase [Vitis vinifera]
COG	YP_007313162.1	CTP synthase
trEMBL	tr\|D7U2F5\|D7U2F5_VITVI	CTP synthase {ECO:0000256\|RuleBase:RU810713}
TAIR10	AT4G02120.1	CTP synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1988787	1997475	+
GWHAAZE00000001	mRNA	1988787	1997475	+
GWHAAZE00000001	exon	1988787	1989060	+
GWHAAZE00000001	exon	1989545	1989624	+
GWHAAZE00000001	exon	1990199	1990285	+
GWHAAZE00000001	exon	1990378	1990428	+
GWHAAZE00000001	exon	1990523	1990640	+
GWHAAZE00000001	exon	1990765	1990821	+
GWHAAZE00000001	exon	1991680	1991744	+
GWHAAZE00000001	exon	1991880	1991963	+
GWHAAZE00000001	exon	1992228	1992278	+
GWHAAZE00000001	exon	1992378	1992440	+
GWHAAZE00000001	exon	1992540	1992586	+
GWHAAZE00000001	exon	1992931	1993006	+
GWHAAZE00000001	exon	1993081	1993143	+
GWHAAZE00000001	exon	1993622	1993711	+
GWHAAZE00000001	exon	1993805	1993843	+
GWHAAZE00000001	exon	1994165	1994314	+
GWHAAZE00000001	exon	1994410	1994487	+
GWHAAZE00000001	exon	1994593	1994678	+
GWHAAZE00000001	exon	1994781	1994828	+
GWHAAZE00000001	exon	1995945	1995993	+
GWHAAZE00000001	exon	1996101	1996181	+
GWHAAZE00000001	exon	1996388	1996481	+
GWHAAZE00000001	exon	1997408	1997475	+
GWHAAZE00000001	CDS	1988787	1989060	+
GWHAAZE00000001	CDS	1989545	1989624	+
GWHAAZE00000001	CDS	1990199	1990285	+
GWHAAZE00000001	CDS	1990378	1990428	+
GWHAAZE00000001	CDS	1990523	1990640	+
GWHAAZE00000001	CDS	1990765	1990821	+
GWHAAZE00000001	CDS	1991680	1991744	+
GWHAAZE00000001	CDS	1991880	1991963	+
GWHAAZE00000001	CDS	1992228	1992278	+
GWHAAZE00000001	CDS	1992378	1992440	+
GWHAAZE00000001	CDS	1992540	1992586	+
GWHAAZE00000001	CDS	1992931	1993006	+
GWHAAZE00000001	CDS	1993081	1993143	+
GWHAAZE00000001	CDS	1993622	1993711	+
GWHAAZE00000001	CDS	1993805	1993843	+
GWHAAZE00000001	CDS	1994165	1994314	+
GWHAAZE00000001	CDS	1994410	1994487	+
GWHAAZE00000001	CDS	1994593	1994678	+
GWHAAZE00000001	CDS	1994781	1994828	+
GWHAAZE00000001	CDS	1995945	1995993	+
GWHAAZE00000001	CDS	1996101	1996181	+
GWHAAZE00000001	CDS	1996388	1996481	+
GWHAAZE00000001	CDS	1997408	1997475	+

Transcript Sequence
>GWHTAAZE000091 ATGCTCGTTTTCTCGAACCAGTACTCCTTTCCCGCTTGGACATTAAAACAAACACTTAGCAGACACAACAAGAAGTTGCAGATAATAAAGCAAAACCTCAAGCTGCAGGATCAAGTAATCGATATGGAGAGGGAGATGGAGGAAAAGAGAAGAAGCATGAAGTACGTTCTGGTGACCGGAGGTGTGGTGAGCGGGCTCGGCAAGGGCGTTACTGCTAGTAGTATTGGCGTTGTCCTCAAAGCCTGTGGCCTTCGCGTTACCTCCATTAAAATCGATCCATACTTAAACACTGATGCTGGTACCATGTCTCCTTTTGAGCATGGGGAGGTTTTTGTACTTGATGATGGCGGAGAGGTTGATCTGGATCTGGGTAATTATGAACGGTTCTTGGATGTTAGACTTACTAGAGACAACAACATTACCACTGGAAAGATATATCAGTCTGTCCTTGAGAAGGAACGGAGAGGAGATTATCTTGGAAAGACTGTCCAGGTGGTTCCACACATCACGGATGCCATTAAGGATTGGGTTGAGTCAGTCTCTGTCATTCCTGTGGATGGGAAAGAGGGTCCCGCAGATGTTTGTGTGATAGAGTTGGGGGGGACTGTAGGTGACATTGAGTCAATGCCATTTATAGAGGCTTTGCGGCAACTATACTTCTCAGTTGGACAAGATAACTTCTGCCTTATTCACGTGAGTCTTATACCAGTCCTGGGTGTTGTTGGAGAGCAAAAAACAAAGCCTACACAACATAGCGTGCGGGAACTGAGAGCGTTAGGCTTGACTCCTCATTTTTTAGCTTGTCGCTCTGCTCAGCCATTATTAGGAAGTACAAAGGAGAAACTTTCGCAGTTTTGCCATGTTCCGATTGGTAATATTCTTAATATCCATGACGTTCCGAACATTTGGCACGTTCCACTTTTACTTAGGAACCAAAATGCTCATGAAGCGATTCTGAAACAGCTAGACTTGCATAGGGAAGCTACAGTACCTGATTTGCAAGAATGGACCAACAGGGCAGAGACTTATGACAACCTGCCCAATTCTGTTCGTGTGAGAATTGCAATGGTTGGGAAATATGTAGGCCTAACAGATTCTTATTTGTCTGTTGTGAAGGCTCTTCTACATGCCTGCATTGCGTGTTCATTGAAGCCAGCAGTTGATTGGATTGCAGCTTCAGACCTTGAAGAAGATGGTGCCAAATTGACACCAGAAGCTCATGCTGCTGCATGGAAAACTTTAAGGAATGCAGCATGTGTCTTGGTTCCTGGTGGATTTGGAGACCGTGGTGTGCGGGGTATGATACTGGCTGCCAAGTATGCCAGAGAAAACAAGGTTCCATACCTTGGGATTTGCTTAGGAATGCAGATTTCTGTTATTGAATTTTCTCGATCTGTTTTGGGTTTGGAAAGGGCAAACAGTGCAGAGTTTGATGCAGAGACACCTAACCCTGTTGTAATTTTCATGCCTGAGGGTTCAAGAACACATATGGGAAGTACAATGAGACTTGGCTCTCGGAGAACACTATTCCAGACCTCTGATTGCATCACTGCAAAGCTGGTACCTGATGAATTTGGGCTAGGATGTGAAGTGAGTCTCAGTTCAAGGTACTGTAATTTAGAGTATGTGGATGAGCGACATCGGCATAGATATGAGGTGAACCCGGAGATGGTTGGCATTTTAGAAGAAGCTGGCTTAAAATTTGTTGGGAGGGATGAAAGTGGACAACGGATGGAGGTTTTGGAACTTCCAGGTCATCCATTCTATGTAGGAGTGCAGTTTCATCCAGAATTCAAGTCGCGGCCTGGGAGGCCTTCAGCTCCATTTCTAGGTCTTATAATGGCAGCAACAGGGCAGTTAGAAGCATACCTCAATAGGCATCAGAATGGAAGTATATAG

Network for GWHGAAZE000091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06418.15	CTP_synth_N	54	324	5.30E-123
PF00117.29	GATase	363	613	1.40E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01937	pyrG, CTPS	Metabolic pathways	map01100
K01937	pyrG, CTPS	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006221	biological_process	pyrimidine nucleotide biosynthetic process
GO:0006241	biological_process	CTP biosynthetic process
GO:0003883	molecular_function	CTP synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.558
	SRR3591706	second leaf	10.642
	SRR3591707	mature leaf	11.627
	SRR3591708	Shoot apex	17.654
	SRR3591709	Stem	13.056
	SRR3591710	White floral bud	12.888
	SRR3591711	White flower	21.402
	SRR3591712	Green floral bud	15.473
	SRR3591713	Yellow flower	16.340
SRP173429	SRR8316895	Juvenile bud stage	12.462
	SRR8316896	Juvenile bud stage	17.431
	SRR8316897	Juvenile bud stage	8.634
	SRR8316894	Third green stage	8.091
	SRR8316900	Third green stage	22.342
	SRR8316901	Third green stage	19.416
	SRR8316898	Complete white stage	4.820
	SRR8316899	Complete white stage	19.649
	SRR8316903	Complete white stage	10.359
	SRR8316902	Silver flowering stage	6.586
	SRR8316904	Silver flowering stage	10.591
	SRR8316905	Silver flowering stage	4.509
	SRR8316906	Gold flowering stage	15.788
	SRR8316907	Gold flowering stage	14.570
	SRR8316908	Gold flowering stage	20.931
SRP132670	SRR6706286	Control	36.903
	SRR6706287	Light intensity 50%	36.734
	SRR6706288	Light intensity 20%	40.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.243
	CNS0095593	Slightly white alabastrum(diploid) 2	10.249
	CNS0095594	Slightly white alabastrum(diploid) 3	8.465
	CNS0095595	Whole white alabastrum(diploid) 2	8.112
	CNS0095596	Whole white alabastrum(diploid) 3	8.290
	CNS0095597	Whole white alabastrum(diploid) 4	6.456
	CNS0095598	Silvery flower (diploied) 1	13.703
	CNS0095599	Silvery flower (diploied) 2	11.948
	CNS0095600	Silvery flower (diploied) 3	13.311
	CNS0095601	Golden flower (diploid) 1	9.394
	CNS0095602	Golden flower (diploid) 2	9.744
	CNS0095603	Golden flower (diploid) 3	11.038
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.777
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.758
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.797
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.257
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.973
	CNS0095610	Silvery flower (tetraploid) 1	21.670
	CNS0095611	Silvery flower (tetraploid) 2	17.148
	CNS0095612	Silvery flower (tetraploid) 3	15.152
	CNS0095613	Golden flower (tetraploid) 1	7.640
	CNS0095614	Golden flower (tetraploid) 2	15.406
	CNS0095615	Golden flower (tetraploid) 3	5.623
CRA001975	CRR073297	Stem 1	22.237
	CRR073298	Stem 2	21.663
	CRR073299	Stem 3	17.770
	CRR073300	Leaf 1	27.685
	CRR073301	Leaf 2	24.672
	CRR073302	Leaf 3	17.964
	CRR073303	Juvenile bud 1	20.309
	CRR073304	Juvenile bud 2	13.642
	CRR073305	Juvenile bud 3	20.429
	CRR073306	Third green 1	5.469
	CRR073307	Third green 2	4.440
	CRR073308	Third green 3	4.996
	CRR073309	Second white 1	3.441
	CRR073310	Second white 2	6.318
	CRR073311	Second white 3	4.676
	CRR073312	Silver flowering 1	3.996
	CRR073313	Silver flowering 2	3.291
	CRR073314	Silver flowering 3	6.063
	CRR073315	Gold flowering 1	5.782
	CRR073316	Gold flowering 2	11.313
	CRR073317	Gold flowering 3	3.912
	CRR073318	Tawny withering 1	11.070
	CRR073319	Tawny withering 2	10.249
	CRR073320	Tawny withering 3	12.850